Gene name: NUP188
Reference locus (S288C): YML103C
Gene biotype: protein_coding
Description: Nucleoporin NUP188; Subunit of the inner ring of the nuclear pore complex (NPC); contributes to NPC organization and nucleocytoplasmic transport; homologous to human NUP188
Top 10 interactors (score): NUP192 (0.999); NUP157 (0.999); NUP170 (0.999); NIC96 (0.998); POM152 (0.992); ASM4 (0.991); NUP53 (0.99); GLE2 (0.987); NUP133 (0.987); NUP85 (0.985); NUP120 (0.984); NUP145 (0.981); NUP100 (0.981); MEX67 (0.977); NUP57 (0.973); NUP1 (0.971); NUP82 (0.969); POM34 (0.968); NUP2 (0.966); SEH1 (0.965)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:56306-61264:- | gene-YML103C_AKU4011 | rna-NM_001182465.1_AKU4011 | cds-NP_013604.1_AKU4011 | 99.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:414858-419819:+ | gene-YML103C_BG1 | rna-NM_001182465.1_BG1 | cds-NP_013604.1_BG1 | 99.5 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:62563-67524:- | gene-YML103C_Bruggeman | rna-NM_001182465.1_Bruggeman | cds-NP_013604.1_Bruggeman | 99.7 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:64116-69083:- | gene-YML103C_CAT1 | rna-NM_001182465.1_CAT1 | cds-NP_013604.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:56308-61266:- | gene-YML103C_CBS1585 | rna-NM_001182465.1_CBS1585 | cds-NP_013604.1_CBS1585 | 99.0 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:62301-67262:- | gene-YML103C_CBS436 | rna-NM_001182465.1_CBS436 | cds-NP_013604.1_CBS436 | 99.5 | 99.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:57071-62029:- | gene-YML103C_CBS6412 | rna-NM_001182465.1_CBS6412 | cds-NP_013604.1_CBS6412 | 99.0 | 99.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:55535-60493:- | gene-YML103C_CBS6413 | rna-NM_001182465.1_CBS6413 | cds-NP_013604.1_CBS6413 | 99.0 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:57180-62141:- | gene-YML103C_CENPK1137D | rna-NM_001182465.1_CENPK1137D | cds-NP_013604.1_CENPK1137D | 99.5 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:56816-61774:- | gene-YML103C_EthanolRed | rna-NM_001182465.1_EthanolRed | cds-NP_013604.1_EthanolRed | 99.0 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:57093-62051:- | gene-YML103C_FaliES1 | rna-NM_001182465.1_FaliES1 | cds-NP_013604.1_FaliES1 | 99.0 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000345.1:28129-33090:+ | gene-YML103C_JAY291 | rna-NM_001182465.1_JAY291 | cds-NP_013604.1_JAY291 | 99.5 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:61013-65968:- | gene-YML103C_MUCL30387 | rna-NM_001182465.1_MUCL30387 | cds-NP_013604.1_MUCL30387 | 99.1 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:64232-69192:- | gene-YML103C_MUCL30388 | rna-NM_001182465.1_MUCL30388 | cds-NP_013604.1_MUCL30388 | 94.3 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:56322-61280:- | gene-YML103C_MUCL39482 | rna-NM_001182465.1_MUCL39482 | cds-NP_013604.1_MUCL39482 | 99.0 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:60478-65445:- | gene-YML103C_MUCL42920 | rna-NM_001182465.1_MUCL42920 | cds-NP_013604.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:62536-67503:- | gene-YML103C_NCIM3186 | rna-NM_001182465.1_NCIM3186 | cds-NP_013604.1_NCIM3186 | 96.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:57116-62074:- | gene-YML103C_NCYC1407 | rna-NM_001182465.1_NCYC1407 | cds-NP_013604.1_NCYC1407 | 99.0 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:62552-67513:- | gene-YML103C_PE2H3 | rna-NM_001182465.1_PE2H3 | cds-NP_013604.1_PE2H3 | 99.5 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:62490-67451:- | gene-YML103C_PE2H4 | rna-NM_001182465.1_PE2H4 | cds-NP_013604.1_PE2H4 | 99.5 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:62582-67549:- | gene-YML103C_S288C | rna-NM_001182465.1_S288C | cds-NP_013604.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000054.1:54556-59517:- | gene-YML103C_SA1 | rna-NM_001182465.1_SA1 | cds-NP_013604.1_SA1 | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:56389-61347:- | gene-YML103C_ThermosaccDry | rna-NM_001182465.1_ThermosaccDry | cds-NP_013604.1_ThermosaccDry | 99.0 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:60771-65732:- | gene-YML103C_VR1 | rna-NM_001182465.1_VR1 | cds-NP_013604.1_VR1 | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:35874-40844:- | gene-YML103C_ZTW1 | rna-NM_001182465.1_ZTW1 | cds-NP_013604.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:67260-72215:- | gene-YML103C_Sparadoxus | rna-NM_001182465.1_Sparadoxus | cds-NP_013604.1_Sparadoxus | 87.7 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |