Gene name: NUP170
Reference locus (S288C): YBL079W
Gene biotype: protein_coding
Description: Nucleoporin NUP170; Subunit of inner ring of nuclear pore complex (NPC); contributes to NPC assembly and nucleocytoplasmic transport; interacts with genomic regions that contain ribosomal protein and subtelomeric genes, where it functions in nucleosome positioning and as a repressor of transcription; both Nup170p and NUP157p are similar to human Nup155p; NUP170 has a paralog, NUP157, that arose from the whole genome duplication
Top 10 interactors (score): NUP53 (0.999); NUP188 (0.999); NUP192 (0.999); NIC96 (0.999); ASM4 (0.998); NUP84 (0.998); NUP2 (0.997); POM152 (0.997); NUP133 (0.997); NSP1 (0.996); NUP145 (0.996); NUP1 (0.994); SEH1 (0.991); NUP100 (0.989); CFT1 (0.988); NUP57 (0.987); SEC13 (0.986); MEX67 (0.986); NUP116 (0.985); NUP157 (0.982)
Homologues (species, bitscore): NUP155 (Homo sapiens, 221.9); Nup155 (Mus musculus, 225.3); nup155 (Danio rerio, 227.6); nup155 (Xenopus tropicalis, 227.3); Nup154 (Drosophila melanogaster, 204.1); npp-8 (Caenorhabditis elegans, 132.9); NUP155 (Arabidopsis thaliana, 104.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:68812-73320:+ | gene-YBL079W_AKU4011 | rna-NM_001178319.1_AKU4011 | cds-NP_009474.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:59703-64211:+ | gene-YBL079W_BG1 | rna-NM_001178319.1_BG1 | cds-NP_009474.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:69421-73929:+ | gene-YBL079W_Bruggeman | rna-NM_001178319.1_Bruggeman | cds-NP_009474.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:71377-75885:+ | gene-YBL079W_CAT1 | rna-NM_001178319.1_CAT1 | cds-NP_009474.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:60911-65419:+ | gene-YBL079W_CBS1585 | rna-NM_001178319.1_CBS1585 | cds-NP_009474.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:69668-74176:+ | gene-YBL079W_CBS436 | rna-NM_001178319.1_CBS436 | cds-NP_009474.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:60304-64812:+ | gene-YBL079W_CBS6412 | rna-NM_001178319.1_CBS6412 | cds-NP_009474.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:66959-71467:+ | gene-YBL079W_CBS6413 | rna-NM_001178319.1_CBS6413 | cds-NP_009474.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:68912-73420:+ | gene-YBL079W_CENPK1137D | rna-NM_001178319.1_CENPK1137D | cds-NP_009474.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:83065-87573:+ | gene-YBL079W_EthanolRed | rna-NM_001178319.1_EthanolRed | cds-NP_009474.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:83194-87702:+ | gene-YBL079W_FaliES1 | rna-NM_001178319.1_FaliES1 | cds-NP_009474.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000019.1:15077-19585:+ | gene-YBL079W_JAY291 | rna-NM_001178319.1_JAY291 | cds-NP_009474.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:68554-73062:+ | gene-YBL079W_MUCL30387 | rna-NM_001178319.1_MUCL30387 | cds-NP_009474.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:70077-74585:+ | gene-YBL079W_MUCL30388 | rna-NM_001178319.1_MUCL30388 | cds-NP_009474.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:61092-65600:+ | gene-YBL079W_MUCL39482 | rna-NM_001178319.1_MUCL39482 | cds-NP_009474.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:67925-72433:+ | gene-YBL079W_MUCL42920 | rna-NM_001178319.1_MUCL42920 | cds-NP_009474.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:75056-79564:+ | gene-YBL079W_NCIM3186 | rna-NM_001178319.1_NCIM3186 | cds-NP_009474.1_NCIM3186 | 97.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:62703-67211:+ | gene-YBL079W_NCYC1407 | rna-NM_001178319.1_NCYC1407 | cds-NP_009474.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:68992-73500:+ | gene-YBL079W_PE2H3 | rna-NM_001178319.1_PE2H3 | cds-NP_009474.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:66636-71144:+ | gene-YBL079W_PE2H4 | rna-NM_001178319.1_PE2H4 | cds-NP_009474.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:75259-79767:+ | gene-YBL079W_S288C | rna-NM_001178319.1_S288C | cds-NP_009474.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:59370-63878:+ | gene-YBL079W_SA1 | rna-NM_001178319.1_SA1 | cds-NP_009474.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:83155-87663:+ | gene-YBL079W_ThermosaccDry | rna-NM_001178319.1_ThermosaccDry | cds-NP_009474.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:65326-69834:+ | gene-YBL079W_VR1 | rna-NM_001178319.1_VR1 | cds-NP_009474.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:60372-64880:+ | gene-YBL079W_ZTW1 | rna-NM_001178319.1_ZTW1 | cds-NP_009474.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:95065-99585:+ | gene-YBL079W_Sparadoxus | rna-NM_001178319.1_Sparadoxus | cds-NP_009474.1_Sparadoxus | 90.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |