Gene name: NUP159
Reference locus (S288C): YIL115C
Gene biotype: protein_coding
Description: FG-nucleoporin component of central core of the nuclear pore complex; also part of the nuclear pore complex (NPC) cytoplasmic filaments; contributes directly to nucleocytoplasmic transport; regulates ADP release from the ATP-dependent RNA helicase Dbp5p; forms a stable association with Nup82p, Gle2p and two other FG-nucleoporins (Nsp1p and Nup116p)
Top 10 interactors (score): NUP82 (0.999); NSP1 (0.999); DBP5 (0.999); GLE1 (0.999); NUP1 (0.999); NUP57 (0.999); NUP2 (0.999); NUP116 (0.999); MEX67 (0.999); NUP100 (0.998); CRM1 (0.997); GLE2 (0.996); KAP95 (0.996); NUP145 (0.996); NUP49 (0.995); NUP84 (0.995); DYN2 (0.994); ASM4 (0.989); NUP60 (0.989); NUP133 (0.988)
Homologues (species, bitscore): Nup214 (Mus musculus, 61.2); nup214 (Danio rerio, 58.9); nup214 (Xenopus tropicalis, 60.1); Nup58 (Drosophila melanogaster, 66.6); glh-2 (Caenorhabditis elegans, 60.1); AT1G10390 (Arabidopsis thaliana, 54.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:145478-150191:- | gene-YIL115C_AKU4011 | rna-NM_001179463.1_AKU4011 | cds-NP_012151.1_AKU4011 | 92.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000164.1:8398-13118:- | gene-YIL115C_BG1 | rna-NM_001179463.1_BG1 | cds-NP_012151.1_BG1 | 92.1 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:149891-154825:- | gene-YIL115C_Bruggeman | rna-NM_001179463.1_Bruggeman | cds-NP_012151.1_Bruggeman | 88.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:142403-146863:- | gene-YIL115C_CAT1 | rna-NM_001179463.1_CAT1 | cds-NP_012151.1_CAT1 | 97.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:145735-150450:- | gene-YIL115C_CBS1585 | rna-NM_001179463.1_CBS1585 | cds-NP_012151.1_CBS1585 | 92.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:136905-141365:- | gene-YIL115C_CBS436 | rna-NM_001179463.1_CBS436 | cds-NP_012151.1_CBS436 | 98.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:143209-147825:- | gene-YIL115C_CBS6412 | rna-NM_001179463.1_CBS6412 | cds-NP_012151.1_CBS6412 | 94.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:136941-141479:- | gene-YIL115C_CBS6413 | rna-NM_001179463.1_CBS6413 | cds-NP_012151.1_CBS6413 | 96.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:136022-140326:- | gene-YIL115C_CENPK1137D | rna-NM_001179463.1_CENPK1137D | cds-NP_012151.1_CENPK1137D | 98.2 | 98.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:130826-135416:- | gene-YIL115C_EthanolRed | rna-NM_001179463.1_EthanolRed | cds-NP_012151.1_EthanolRed | 94.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:146877-151415:- | gene-YIL115C_FaliES1 | rna-NM_001179463.1_FaliES1 | cds-NP_012151.1_FaliES1 | 95.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000383.1:1-2630:+ | gene-YIL115C_JAY291 | rna-NM_001179463.1_JAY291 | cds-NP_012151.1_JAY291 | 59.6 | 60.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:147209-151669:- | gene-YIL115C_MUCL30387 | rna-NM_001179463.1_MUCL30387 | cds-NP_012151.1_MUCL30387 | 97.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:145715-150409:- | gene-YIL115C_MUCL30388 | rna-NM_001179463.1_MUCL30388 | cds-NP_012151.1_MUCL30388 | 92.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:146678-151294:- | gene-YIL115C_MUCL39482 | rna-NM_001179463.1_MUCL39482 | cds-NP_012151.1_MUCL39482 | 94.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:150170-154552:- | gene-YIL115C_MUCL42920 | rna-NM_001179463.1_MUCL42920 | cds-NP_012151.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:144327-148709:- | gene-YIL115C_NCIM3186 | rna-NM_001179463.1_NCIM3186 | cds-NP_012151.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:150722-155338:- | gene-YIL115C_NCYC1407 | rna-NM_001179463.1_NCYC1407 | cds-NP_012151.1_NCYC1407 | 94.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:145212-149828:- | gene-YIL115C_PE2H3 | rna-NM_001179463.1_PE2H3 | cds-NP_012151.1_PE2H3 | 94.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:139341-143864:- | gene-YIL115C_PE2H4 | rna-NM_001179463.1_PE2H4 | cds-NP_012151.1_PE2H4 | 96.0 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:144327-148709:- | gene-YIL115C_S288C | rna-NM_001179463.1_S288C | cds-NP_012151.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000058.1:34648-39108:+ | gene-YIL115C_SA1 | rna-NM_001179463.1_SA1 | cds-NP_012151.1_SA1 | 97.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:145534-150072:- | gene-YIL115C_ThermosaccDry | rna-NM_001179463.1_ThermosaccDry | cds-NP_012151.1_ThermosaccDry | 95.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:142521-146981:- | gene-YIL115C_VR1 | rna-NM_001179463.1_VR1 | cds-NP_012151.1_VR1 | 97.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:120399-125015:- | gene-YIL115C_ZTW1 | rna-NM_001179463.1_ZTW1 | cds-NP_012151.1_ZTW1 | 94.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:138237-142829:- | gene-YIL115C_Sparadoxus | rna-NM_001179463.1_Sparadoxus | cds-NP_012151.1_Sparadoxus | 80.5 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |