Gene name: NUP120
Reference locus (S288C): YKL057C
Gene biotype: protein_coding
Description: Nucleoporin NUP120; Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC); contributes to nucleocytoplasmic transport and NPC biogenesis and is involved in establishment of a normal nucleocytoplasmic concentration gradient of the GTPase Gsp1p; also plays roles in several processes that may require localization of genes or chromosomes at the nuclear periphery, including double-strand break repair, transcription and chromatin silencing; homologous to human NUP160
Top 10 interactors (score): NUP145 (0.999); SEH1 (0.999); NUP84 (0.999); SEC13 (0.999); NUP133 (0.999); NUP85 (0.999); MEX67 (0.993); NUP188 (0.984); NUP82 (0.97); NUP116 (0.968); NUP57 (0.966); NUP192 (0.961); NUP100 (0.959); NIC96 (0.959); NUP170 (0.946); NUP49 (0.929); NUP157 (0.927); STO1 (0.918); NUP2 (0.916); SSA1 (0.91)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:316831-319944:- | gene-YKL057C_AKU4011 | rna-NM_001179623.1_AKU4011 | cds-NP_012866.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:324008-327121:+ | gene-YKL057C_BG1 | rna-NM_001179623.1_BG1 | cds-NP_012866.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:335869-338982:- | gene-YKL057C_Bruggeman | rna-NM_001179623.1_Bruggeman | cds-NP_012866.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:332307-335420:- | gene-YKL057C_CAT1 | rna-NM_001179623.1_CAT1 | cds-NP_012866.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:329561-332674:- | gene-YKL057C_CBS1585 | rna-NM_001179623.1_CBS1585 | cds-NP_012866.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:327715-330828:- | gene-YKL057C_CBS436 | rna-NM_001179623.1_CBS436 | cds-NP_012866.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:313702-316815:- | gene-YKL057C_CBS6412 | rna-NM_001179623.1_CBS6412 | cds-NP_012866.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:329527-332640:- | gene-YKL057C_CBS6413 | rna-NM_001179623.1_CBS6413 | cds-NP_012866.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:330517-333630:- | gene-YKL057C_CENPK1137D | rna-NM_001179623.1_CENPK1137D | cds-NP_012866.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:327533-330646:- | gene-YKL057C_EthanolRed | rna-NM_001179623.1_EthanolRed | cds-NP_012866.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:328346-331459:- | gene-YKL057C_FaliES1 | rna-NM_001179623.1_FaliES1 | cds-NP_012866.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000080.1:33277-36390:- | gene-YKL057C_JAY291 | rna-NM_001179623.1_JAY291 | cds-NP_012866.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:336780-339893:- | gene-YKL057C_MUCL30387 | rna-NM_001179623.1_MUCL30387 | cds-NP_012866.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:331679-334792:- | gene-YKL057C_MUCL30388 | rna-NM_001179623.1_MUCL30388 | cds-NP_012866.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:328857-331970:- | gene-YKL057C_MUCL39482 | rna-NM_001179623.1_MUCL39482 | cds-NP_012866.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:333767-336880:- | gene-YKL057C_MUCL42920 | rna-NM_001179623.1_MUCL42920 | cds-NP_012866.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:330845-333958:- | gene-YKL057C_NCIM3186 | rna-NM_001179623.1_NCIM3186 | cds-NP_012866.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:329054-332167:- | gene-YKL057C_NCYC1407 | rna-NM_001179623.1_NCYC1407 | cds-NP_012866.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:353618-356731:- | gene-YKL057C_PE2H3 | rna-NM_001179623.1_PE2H3 | cds-NP_012866.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:338358-341471:- | gene-YKL057C_PE2H4 | rna-NM_001179623.1_PE2H4 | cds-NP_012866.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:330856-333969:- | gene-YKL057C_S288C | rna-NM_001179623.1_S288C | cds-NP_012866.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000027.1:8854-11967:- | gene-YKL057C_SA1 | rna-NM_001179623.1_SA1 | cds-NP_012866.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:329536-332649:- | gene-YKL057C_ThermosaccDry | rna-NM_001179623.1_ThermosaccDry | cds-NP_012866.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:328683-331796:- | gene-YKL057C_VR1 | rna-NM_001179623.1_VR1 | cds-NP_012866.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:327582-330695:- | gene-YKL057C_ZTW1 | rna-NM_001179623.1_ZTW1 | cds-NP_012866.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:346773-349886:- | gene-YKL057C_Sparadoxus | rna-NM_001179623.1_Sparadoxus | cds-NP_012866.1_Sparadoxus | 90.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |