Gene name: NUP116
Reference locus (S288C): YMR047C
Gene biotype: protein_coding
Description: FG-nucleoporin component of central core of the nuclear pore complex; contributes directly to nucleocytoplasmic transport and maintenance of the nuclear pore complex (NPC) permeability barrier; forms a stable association with Nup82p, Gle2p and two other FG-nucleoporins (Nsp1p and Nup159p); NUP116 has a paralog, NUP100, that arose from the whole genome duplication
Top 10 interactors (score): NUP82 (0.999); NUP84 (0.999); KAP95 (0.999); NSP1 (0.999); SEH1 (0.999); NUP159 (0.999); SEC13 (0.999); GLE2 (0.999); GLE1 (0.998); MEX67 (0.998); NUP1 (0.997); NUP2 (0.997); NUP42 (0.997); NUP192 (0.997); CRM1 (0.995); NUP100 (0.993); NIC96 (0.992); ASM4 (0.992); NUP145 (0.99); NUP57 (0.99)
Homologues (species, bitscore): NUP98 (Homo sapiens, 141.7); Nup98 (Mus musculus, 156.4); nup98 (Danio rerio, 151.0); nup214 (Xenopus tropicalis, 57.4); Nup98-96 (Drosophila melanogaster, 123.6); npp-10 (Caenorhabditis elegans, 148.3); AT1G59660 (Arabidopsis thaliana, 101.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:407036-410377:- | gene-YMR047C_AKU4011 | rna-NM_001182544.1_AKU4011 | cds-NP_013762.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:132401-135742:+ | gene-YMR047C_BG1 | rna-NM_001182544.1_BG1 | cds-NP_013762.1_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:346988-350329:- | gene-YMR047C_Bruggeman | rna-NM_001182544.1_Bruggeman | cds-NP_013762.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:349523-352864:- | gene-YMR047C_CAT1 | rna-NM_001182544.1_CAT1 | cds-NP_013762.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:339978-343319:- | gene-YMR047C_CBS1585 | rna-NM_001182544.1_CBS1585 | cds-NP_013762.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:345533-348874:- | gene-YMR047C_CBS436 | rna-NM_001182544.1_CBS436 | cds-NP_013762.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:453379-456720:- | gene-YMR047C_CBS6412 | rna-NM_001182544.1_CBS6412 | cds-NP_013762.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:339233-342574:- | gene-YMR047C_CBS6413 | rna-NM_001182544.1_CBS6413 | cds-NP_013762.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:352174-355515:- | gene-YMR047C_CENPK1137D | rna-NM_001182544.1_CENPK1137D | cds-NP_013762.1_CENPK1137D | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:339812-343153:- | gene-YMR047C_EthanolRed | rna-NM_001182544.1_EthanolRed | cds-NP_013762.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:342991-346332:- | gene-YMR047C_FaliES1 | rna-NM_001182544.1_FaliES1 | cds-NP_013762.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000033.1:90611-93952:+ | gene-YMR047C_JAY291 | rna-NM_001182544.1_JAY291 | cds-NP_013762.1_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:344947-348288:- | gene-YMR047C_MUCL30387 | rna-NM_001182544.1_MUCL30387 | cds-NP_013762.1_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:349602-352943:- | gene-YMR047C_MUCL30388 | rna-NM_001182544.1_MUCL30388 | cds-NP_013762.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:340266-343607:- | gene-YMR047C_MUCL39482 | rna-NM_001182544.1_MUCL39482 | cds-NP_013762.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:346090-349431:- | gene-YMR047C_MUCL42920 | rna-NM_001182544.1_MUCL42920 | cds-NP_013762.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:363318-366659:- | gene-YMR047C_NCIM3186 | rna-NM_001182544.1_NCIM3186 | cds-NP_013762.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:340177-343518:- | gene-YMR047C_NCYC1407 | rna-NM_001182544.1_NCYC1407 | cds-NP_013762.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:346123-349464:- | gene-YMR047C_PE2H3 | rna-NM_001182544.1_PE2H3 | cds-NP_013762.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:352218-355559:- | gene-YMR047C_PE2H4 | rna-NM_001182544.1_PE2H4 | cds-NP_013762.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:363364-366705:- | gene-YMR047C_S288C | rna-NM_001182544.1_S288C | cds-NP_013762.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:177474-180815:+ | gene-YMR047C_SA1 | rna-NM_001182544.1_SA1 | cds-NP_013762.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:340063-343404:- | gene-YMR047C_ThermosaccDry | rna-NM_001182544.1_ThermosaccDry | cds-NP_013762.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:344780-348121:- | gene-YMR047C_VR1 | rna-NM_001182544.1_VR1 | cds-NP_013762.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:319080-322421:- | gene-YMR047C_ZTW1 | rna-NM_001182544.1_ZTW1 | cds-NP_013762.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:353310-356639:- | gene-YMR047C_Sparadoxus | rna-NM_001182544.1_Sparadoxus | cds-NP_013762.1_Sparadoxus | 85.8 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |