Gene name: NUP100
Reference locus (S288C): YKL068W
Gene biotype: protein_coding
Description: FG-nucleoporin component of central core of the nuclear pore complex; contributes directly to nucleocytoplasmic transport and maintenance of the nuclear pore complex (NPC) permeability barrier and is involved in gene tethering at the nuclear periphery; NUP100 has a paralog, NUP116, that arose from the whole genome duplication
Top 10 interactors (score): SEH1 (0.999); KAP95 (0.999); NUP84 (0.999); GLE2 (0.999); NSP1 (0.998); NUP159 (0.998); SEC13 (0.998); NUP60 (0.997); NUP1 (0.997); NUP42 (0.995); NUP57 (0.995); CRM1 (0.994); NUP2 (0.994); GLE1 (0.993); NUP192 (0.993); NUP145 (0.993); NUP116 (0.993); MEX67 (0.99); NUP133 (0.989); NUP170 (0.989)
Homologues (species, bitscore): NUP98 (Homo sapiens, 119.8); Nup98 (Mus musculus, 136.3); nup98 (Danio rerio, 125.9); nup98 (Xenopus tropicalis, 54.7); Nup98-96 (Drosophila melanogaster, 79.7); npp-10 (Caenorhabditis elegans, 130.2); AT1G59660 (Arabidopsis thaliana, 111.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:296729-299722:+ | gene-YKL068W_AKU4011 | rna-NM_001179634.1_AKU4011 | cds-NP_012855.1_AKU4011 | 94.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000005.1:1559-4447:+ | gene-YKL068W_BG1 | rna-NM_001179634.1_BG1 | cds-NP_012855.1_BG1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:315778-318771:+ | gene-YKL068W_Bruggeman | rna-NM_001179634.1_Bruggeman | cds-NP_012855.1_Bruggeman | 94.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:309738-313811:+ | gene-YKL068W_CAT1 | rna-NM_001179634.1_CAT1 | cds-NP_012855.1_CAT1 | 70.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:309458-312451:+ | gene-YKL068W_CBS1585 | rna-NM_001179634.1_CBS1585 | cds-NP_012855.1_CBS1585 | 94.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:307603-310596:+ | gene-YKL068W_CBS436 | rna-NM_001179634.1_CBS436 | cds-NP_012855.1_CBS436 | 94.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:293596-296589:+ | gene-YKL068W_CBS6412 | rna-NM_001179634.1_CBS6412 | cds-NP_012855.1_CBS6412 | 94.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:309424-312417:+ | gene-YKL068W_CBS6413 | rna-NM_001179634.1_CBS6413 | cds-NP_012855.1_CBS6413 | 94.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:309860-312739:+ | gene-YKL068W_CENPK1137D | rna-NM_001179634.1_CENPK1137D | cds-NP_012855.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:307420-310413:+ | gene-YKL068W_EthanolRed | rna-NM_001179634.1_EthanolRed | cds-NP_012855.1_EthanolRed | 94.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:308233-311226:+ | gene-YKL068W_FaliES1 | rna-NM_001179634.1_FaliES1 | cds-NP_012855.1_FaliES1 | 94.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000357.1:130604-133492:+ | gene-YKL068W_JAY291 | rna-NM_001179634.1_JAY291 | cds-NP_012855.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:316678-319671:+ | gene-YKL068W_MUCL30387 | rna-NM_001179634.1_MUCL30387 | cds-NP_012855.1_MUCL30387 | 94.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:311484-314580:+ | gene-YKL068W_MUCL30388 | rna-NM_001179634.1_MUCL30388 | cds-NP_012855.1_MUCL30388 | 91.6 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:308755-311748:+ | gene-YKL068W_MUCL39482 | rna-NM_001179634.1_MUCL39482 | cds-NP_012855.1_MUCL39482 | 94.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:313673-316666:+ | gene-YKL068W_MUCL42920 | rna-NM_001179634.1_MUCL42920 | cds-NP_012855.1_MUCL42920 | 94.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:310188-313067:+ | gene-YKL068W_NCIM3186 | rna-NM_001179634.1_NCIM3186 | cds-NP_012855.1_NCIM3186 | 98.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:308950-311943:+ | gene-YKL068W_NCYC1407 | rna-NM_001179634.1_NCYC1407 | cds-NP_012855.1_NCYC1407 | 94.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:316046-318934:+ | gene-YKL068W_PE2H3 | rna-NM_001179634.1_PE2H3 | cds-NP_012855.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:318264-321257:+ | gene-YKL068W_PE2H4 | rna-NM_001179634.1_PE2H4 | cds-NP_012855.1_PE2H4 | 94.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:310199-313078:+ | gene-YKL068W_S288C | rna-NM_001179634.1_S288C | cds-NP_012855.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000008.1:226677-229670:+ | gene-YKL068W_SA1 | rna-NM_001179634.1_SA1 | cds-NP_012855.1_SA1 | 94.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:309432-312425:+ | gene-YKL068W_ThermosaccDry | rna-NM_001179634.1_ThermosaccDry | cds-NP_012855.1_ThermosaccDry | 94.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:308590-311583:+ | gene-YKL068W_VR1 | rna-NM_001179634.1_VR1 | cds-NP_012855.1_VR1 | 94.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:307478-310471:+ | gene-YKL068W_ZTW1 | rna-NM_001179634.1_ZTW1 | cds-NP_012855.1_ZTW1 | 94.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:326081-329095:+ | gene-YKL068W_Sparadoxus | rna-NM_001179634.1_Sparadoxus | cds-NP_012855.1_Sparadoxus | 82.3 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |