Gene name: NUP1
Reference locus (S288C): YOR098C
Gene biotype: protein_coding
Description: FG-nucleoporin component of central core of the nuclear pore complex; contributes directly to nucleocytoplasmic transport and maintenance of thenuclear pore complex (NPC) permeability barrier; possible karyopherin release factor that accelerates release of karyopherin-cargo complexes after transport across NPC; both NUP1 and NUP60 are homologous to human NUP153
Top 10 interactors (score): NUP159 (0.999); SRP1 (0.999); KAP95 (0.999); MEX67 (0.998); NUP60 (0.998); NUP100 (0.997); NUP116 (0.997); MLP2 (0.996); NUP145 (0.996); NUP57 (0.996); NUP84 (0.995); NUP170 (0.994); NUP2 (0.993); MLP1 (0.993); NUP49 (0.992); NUP42 (0.989); NSP1 (0.989); NIC96 (0.989); NUP53 (0.985); NUP82 (0.982)
Homologues (species, bitscore): Nup153 (Mus musculus, 50.4); nup153 (Danio rerio, 50.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:492021-495251:- | gene-YOR098C_AKU4011 | rna-NM_001183517.1_AKU4011 | cds-NP_014741.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000171.1:83804-87034:+ | gene-YOR098C_BG1 | rna-NM_001183517.1_BG1 | cds-NP_014741.1_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:495605-498835:- | gene-YOR098C_Bruggeman | rna-NM_001183517.1_Bruggeman | cds-NP_014741.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:495579-498809:- | gene-YOR098C_CAT1 | rna-NM_001183517.1_CAT1 | cds-NP_014741.1_CAT1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:487313-490543:- | gene-YOR098C_CBS1585 | rna-NM_001183517.1_CBS1585 | cds-NP_014741.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:492340-495570:- | gene-YOR098C_CBS436 | rna-NM_001183517.1_CBS436 | cds-NP_014741.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:486054-489284:- | gene-YOR098C_CBS6412 | rna-NM_001183517.1_CBS6412 | cds-NP_014741.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:493349-496579:- | gene-YOR098C_CBS6413 | rna-NM_001183517.1_CBS6413 | cds-NP_014741.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:507993-511223:- | gene-YOR098C_CENPK1137D | rna-NM_001183517.1_CENPK1137D | cds-NP_014741.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:488553-491783:- | gene-YOR098C_EthanolRed | rna-NM_001183517.1_EthanolRed | cds-NP_014741.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:492062-495292:- | gene-YOR098C_FaliES1 | rna-NM_001183517.1_FaliES1 | cds-NP_014741.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000063.1:63952-67182:+ | gene-YOR098C_JAY291 | rna-NM_001183517.1_JAY291 | cds-NP_014741.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:500141-503371:- | gene-YOR098C_MUCL30387 | rna-NM_001183517.1_MUCL30387 | cds-NP_014741.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:505327-508557:- | gene-YOR098C_MUCL30388 | rna-NM_001183517.1_MUCL30388 | cds-NP_014741.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:494958-498188:- | gene-YOR098C_MUCL39482 | rna-NM_001183517.1_MUCL39482 | cds-NP_014741.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:511047-514277:- | gene-YOR098C_MUCL42920 | rna-NM_001183517.1_MUCL42920 | cds-NP_014741.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:507837-511067:- | gene-YOR098C_NCIM3186 | rna-NM_001183517.1_NCIM3186 | cds-NP_014741.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:501410-504640:- | gene-YOR098C_NCYC1407 | rna-NM_001183517.1_NCYC1407 | cds-NP_014741.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:500412-503642:- | gene-YOR098C_PE2H3 | rna-NM_001183517.1_PE2H3 | cds-NP_014741.1_PE2H3 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:510788-514018:- | gene-YOR098C_PE2H4 | rna-NM_001183517.1_PE2H4 | cds-NP_014741.1_PE2H4 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:507948-511178:- | gene-YOR098C_S288C | rna-NM_001183517.1_S288C | cds-NP_014741.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000098.1:11636-14866:+ | gene-YOR098C_SA1 | rna-NM_001183517.1_SA1 | cds-NP_014741.1_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:491216-494446:- | gene-YOR098C_ThermosaccDry | rna-NM_001183517.1_ThermosaccDry | cds-NP_014741.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:493339-496569:- | gene-YOR098C_VR1 | rna-NM_001183517.1_VR1 | cds-NP_014741.1_VR1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:225205-228436:- | gene-YOR098C_ZTW1 | rna-NM_001183517.1_ZTW1 | cds-NP_014741.1_ZTW1 | 99.7 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:497179-500457:- | gene-YOR098C_Sparadoxus | rna-NM_001183517.1_Sparadoxus | cds-NP_014741.1_Sparadoxus | 81.2 | 99.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |