Gene name: NTR2
Reference locus (S288C): YKR022C
Gene biotype: protein_coding
Description: Pre-mRNA-splicing factor NTR2; Essential protein that forms a dimer with Ntr1p; also forms a trimer, with Ntr2p and the DExD/H-box RNA helicase Prp43p, that is involved in spliceosome disassembly
Top 10 interactors (score): SPP382 (0.999); PRP43 (0.996); CLF1 (0.992); SYF2 (0.992); PRP45 (0.99); SYF1 (0.986); CWC23 (0.978); SMB1 (0.963); ISY1 (0.961); YJU2 (0.936); CEF1 (0.935); CWC15 (0.932); PRP8 (0.914); BUD31 (0.906); SNU114 (0.898); SNT309 (0.871); PRP19 (0.857); BRR2 (0.85); LEA1 (0.849); PRP46 (0.834)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:467843-468811:- | gene-YKR022C_AKU4011 | rna-NM_001179812.1_AKU4011 | cds-NP_012947.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:174676-175644:+ | gene-YKR022C_BG1 | rna-NM_001179812.1_BG1 | cds-NP_012947.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:489513-490481:- | gene-YKR022C_Bruggeman | rna-NM_001179812.1_Bruggeman | cds-NP_012947.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:485254-486222:- | gene-YKR022C_CAT1 | rna-NM_001179812.1_CAT1 | cds-NP_012947.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:480583-481551:- | gene-YKR022C_CBS1585 | rna-NM_001179812.1_CBS1585 | cds-NP_012947.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:479411-480379:- | gene-YKR022C_CBS436 | rna-NM_001179812.1_CBS436 | cds-NP_012947.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:464744-465712:- | gene-YKR022C_CBS6412 | rna-NM_001179812.1_CBS6412 | cds-NP_012947.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:480411-481379:- | gene-YKR022C_CBS6413 | rna-NM_001179812.1_CBS6413 | cds-NP_012947.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:481913-482881:- | gene-YKR022C_CENPK1137D | rna-NM_001179812.1_CENPK1137D | cds-NP_012947.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:478311-479279:- | gene-YKR022C_EthanolRed | rna-NM_001179812.1_EthanolRed | cds-NP_012947.1_EthanolRed | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:481241-482209:- | gene-YKR022C_FaliES1 | rna-NM_001179812.1_FaliES1 | cds-NP_012947.1_FaliES1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000077.1:71550-72518:+ | gene-YKR022C_JAY291 | rna-NM_001179812.1_JAY291 | cds-NP_012947.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:488829-489797:- | gene-YKR022C_MUCL30387 | rna-NM_001179812.1_MUCL30387 | cds-NP_012947.1_MUCL30387 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:484520-485488:- | gene-YKR022C_MUCL30388 | rna-NM_001179812.1_MUCL30388 | cds-NP_012947.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:479900-480868:- | gene-YKR022C_MUCL39482 | rna-NM_001179812.1_MUCL39482 | cds-NP_012947.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:485672-486640:- | gene-YKR022C_MUCL42920 | rna-NM_001179812.1_MUCL42920 | cds-NP_012947.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:482160-483128:- | gene-YKR022C_NCIM3186 | rna-NM_001179812.1_NCIM3186 | cds-NP_012947.1_NCIM3186 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:480107-481075:- | gene-YKR022C_NCYC1407 | rna-NM_001179812.1_NCYC1407 | cds-NP_012947.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:505092-506060:- | gene-YKR022C_PE2H3 | rna-NM_001179812.1_PE2H3 | cds-NP_012947.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:489815-490783:- | gene-YKR022C_PE2H4 | rna-NM_001179812.1_PE2H4 | cds-NP_012947.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:482171-483139:- | gene-YKR022C_S288C | rna-NM_001179812.1_S288C | cds-NP_012947.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000078.1:30609-31577:+ | gene-YKR022C_SA1 | rna-NM_001179812.1_SA1 | cds-NP_012947.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:480496-481464:- | gene-YKR022C_ThermosaccDry | rna-NM_001179812.1_ThermosaccDry | cds-NP_012947.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:480112-481080:- | gene-YKR022C_VR1 | rna-NM_001179812.1_VR1 | cds-NP_012947.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:478543-479511:- | gene-YKR022C_ZTW1 | rna-NM_001179812.1_ZTW1 | cds-NP_012947.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:503977-504945:- | gene-YKR022C_Sparadoxus | rna-NM_001179812.1_Sparadoxus | cds-NP_012947.1_Sparadoxus | 85.7 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |