Gene name: NTF2
Reference locus (S288C): YER009W
Gene biotype: protein_coding
Description: Nuclear transport factor 2; Nuclear envelope protein; interacts with GDP-bound Gsp1p and with proteins of the nuclear pore to transport Gsp1p into the nucleus where it is an essential player in nucleocytoplasmic transport
Top 10 interactors (score): GSP1 (0.999); NSP1 (0.999); GSP2 (0.998); SRM1 (0.997); NUP2 (0.997); RNA1 (0.994); KAP95 (0.994); SRP1 (0.993); MEX67 (0.989); YRB1 (0.984); CRM1 (0.98); NUP159 (0.976); GSH2 (0.962); QRI1 (0.962); MOG1 (0.957); NUP1 (0.941); KAP104 (0.94); YRB2 (0.93); NUP100 (0.911); LOS1 (0.911)
Homologues (species, bitscore): NUTF2 (Homo sapiens, 97.8); Nutf2 (Mus musculus, 97.8); nutf2 (Danio rerio, 94.7); nutf2 (Xenopus tropicalis, 92.8); Ntf-2r (Drosophila melanogaster, 97.4); ran-4 (Caenorhabditis elegans, 81.3); NTF2A (Arabidopsis thaliana, 136.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:165803-166180:+ | gene-YER009W_AKU4011 | rna-NM_001178900.1_AKU4011 | cds-NP_010925.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:259503-259880:- | gene-YER009W_BG1 | rna-NM_001178900.1_BG1 | cds-NP_010925.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:173491-173868:+ | gene-YER009W_Bruggeman | rna-NM_001178900.1_Bruggeman | cds-NP_010925.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:168720-169097:+ | gene-YER009W_CAT1 | rna-NM_001178900.1_CAT1 | cds-NP_010925.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:166112-166489:+ | gene-YER009W_CBS1585 | rna-NM_001178900.1_CBS1585 | cds-NP_010925.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:167381-167758:+ | gene-YER009W_CBS436 | rna-NM_001178900.1_CBS436 | cds-NP_010925.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:166006-166383:+ | gene-YER009W_CBS6412 | rna-NM_001178900.1_CBS6412 | cds-NP_010925.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:170652-171029:+ | gene-YER009W_CBS6413 | rna-NM_001178900.1_CBS6413 | cds-NP_010925.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:169941-170318:+ | gene-YER009W_CENPK1137D | rna-NM_001178900.1_CENPK1137D | cds-NP_010925.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:166467-166844:+ | gene-YER009W_EthanolRed | rna-NM_001178900.1_EthanolRed | cds-NP_010925.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:166727-167104:+ | gene-YER009W_FaliES1 | rna-NM_001178900.1_FaliES1 | cds-NP_010925.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000024.1:33695-34072:+ | gene-YER009W_JAY291 | rna-NM_001178900.1_JAY291 | cds-NP_010925.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:170028-170405:+ | gene-YER009W_MUCL30387 | rna-NM_001178900.1_MUCL30387 | cds-NP_010925.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:166548-166925:+ | gene-YER009W_MUCL30388 | rna-NM_001178900.1_MUCL30388 | cds-NP_010925.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:165148-165525:+ | gene-YER009W_MUCL39482 | rna-NM_001178900.1_MUCL39482 | cds-NP_010925.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:171020-171397:+ | gene-YER009W_MUCL42920 | rna-NM_001178900.1_MUCL42920 | cds-NP_010925.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:172114-172491:+ | gene-YER009W_NCIM3186 | rna-NM_001178900.1_NCIM3186 | cds-NP_010925.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:170222-170599:+ | gene-YER009W_NCYC1407 | rna-NM_001178900.1_NCYC1407 | cds-NP_010925.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:174522-174899:+ | gene-YER009W_PE2H3 | rna-NM_001178900.1_PE2H3 | cds-NP_010925.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:170437-170814:+ | gene-YER009W_PE2H4 | rna-NM_001178900.1_PE2H4 | cds-NP_010925.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:172115-172492:+ | gene-YER009W_S288C | rna-NM_001178900.1_S288C | cds-NP_010925.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000020.1:71118-71495:- | gene-YER009W_SA1 | rna-NM_001178900.1_SA1 | cds-NP_010925.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:167133-167510:+ | gene-YER009W_ThermosaccDry | rna-NM_001178900.1_ThermosaccDry | cds-NP_010925.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:166613-166990:+ | gene-YER009W_VR1 | rna-NM_001178900.1_VR1 | cds-NP_010925.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:165163-165540:+ | gene-YER009W_ZTW1 | rna-NM_001178900.1_ZTW1 | cds-NP_010925.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:169890-170267:+ | gene-YER009W_Sparadoxus | rna-NM_001178900.1_Sparadoxus | cds-NP_010925.1_Sparadoxus | 95.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |