Gene name: NTC20
Reference locus (S288C): YBR188C
Gene biotype: protein_coding
Description: Pre-mRNA-splicing factor NTC20; Member of the NineTeen Complex (NTC); this complex contains Prp19p and stabilizes U6 snRNA in catalytic forms of the spliceosome containing U2, U5, and U6 snRNAs
Top 10 interactors (score): CEF1 (0.999); CLF1 (0.999); SNT309 (0.999); PRP19 (0.999); ISY1 (0.999); CWC2 (0.999); PRP46 (0.999); SYF1 (0.998); SYF2 (0.995); YJU2 (0.991); PRP45 (0.986); PRP16 (0.936); PRP22 (0.934); IST3 (0.932); ECM2 (0.912); CWC25 (0.876); SLU7 (0.82); PRP2 (0.818); NTR2 (0.817); CWC21 (0.788)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:587054-587476:- | gene-YBR188C_AKU4011 | rna-NM_001178536.3_AKU4011 | cds-NP_009747.3_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:577061-577483:- | gene-YBR188C_BG1 | rna-NM_001178536.3_BG1 | cds-NP_009747.3_BG1 | 98.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:392914-393336:- | gene-YBR188C_Bruggeman | rna-NM_001178536.3_Bruggeman | cds-NP_009747.3_Bruggeman | 97.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:592322-592744:- | gene-YBR188C_CAT1 | rna-NM_001178536.3_CAT1 | cds-NP_009747.3_CAT1 | 98.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:578835-579257:- | gene-YBR188C_CBS1585 | rna-NM_001178536.3_CBS1585 | cds-NP_009747.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:586387-586809:- | gene-YBR188C_CBS436 | rna-NM_001178536.3_CBS436 | cds-NP_009747.3_CBS436 | 98.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:675444-675866:- | gene-YBR188C_CBS6412 | rna-NM_001178536.3_CBS6412 | cds-NP_009747.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:584641-585063:- | gene-YBR188C_CBS6413 | rna-NM_001178536.3_CBS6413 | cds-NP_009747.3_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:597459-597881:- | gene-YBR188C_CENPK1137D | rna-NM_001178536.3_CENPK1137D | cds-NP_009747.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:712211-712633:- | gene-YBR188C_EthanolRed | rna-NM_001178536.3_EthanolRed | cds-NP_009747.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:603122-603544:- | gene-YBR188C_FaliES1 | rna-NM_001178536.3_FaliES1 | cds-NP_009747.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000104.1:2675-3097:+ | gene-YBR188C_JAY291 | rna-NM_001178536.3_JAY291 | cds-NP_009747.3_JAY291 | 98.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:591595-592017:- | gene-YBR188C_MUCL30387 | rna-NM_001178536.3_MUCL30387 | cds-NP_009747.3_MUCL30387 | 97.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:608670-609092:- | gene-YBR188C_MUCL30388 | rna-NM_001178536.3_MUCL30388 | cds-NP_009747.3_MUCL30388 | 97.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:577208-577630:- | gene-YBR188C_MUCL39482 | rna-NM_001178536.3_MUCL39482 | cds-NP_009747.3_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:586630-587052:- | gene-YBR188C_MUCL42920 | rna-NM_001178536.3_MUCL42920 | cds-NP_009747.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:603482-603904:- | gene-YBR188C_NCIM3186 | rna-NM_001178536.3_NCIM3186 | cds-NP_009747.3_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:579316-579738:- | gene-YBR188C_NCYC1407 | rna-NM_001178536.3_NCYC1407 | cds-NP_009747.3_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:591933-592355:- | gene-YBR188C_PE2H3 | rna-NM_001178536.3_PE2H3 | cds-NP_009747.3_PE2H3 | 98.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:589609-590031:- | gene-YBR188C_PE2H4 | rna-NM_001178536.3_PE2H4 | cds-NP_009747.3_PE2H4 | 98.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:603685-604107:- | gene-YBR188C_S288C | rna-NM_001178536.3_S288C | cds-NP_009747.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000080.1:11383-11805:- | gene-YBR188C_SA1 | rna-NM_001178536.3_SA1 | cds-NP_009747.3_SA1 | 98.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:602132-602554:- | gene-YBR188C_ThermosaccDry | rna-NM_001178536.3_ThermosaccDry | cds-NP_009747.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:583308-583730:- | gene-YBR188C_VR1 | rna-NM_001178536.3_VR1 | cds-NP_009747.3_VR1 | 98.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:576749-577171:- | gene-YBR188C_ZTW1 | rna-NM_001178536.3_ZTW1 | cds-NP_009747.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:618587-619009:- | gene-YBR188C_Sparadoxus | rna-NM_001178536.3_Sparadoxus | cds-NP_009747.3_Sparadoxus | 78.7 | 98.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |