Gene name: NSP1
Reference locus (S288C): YJL041W
Gene biotype: protein_coding
Description: FG-nucleoporin component of central core of the nuclear pore complex; also part of the nuclear pore complex (NPC) nuclear basket; contributes directly to nucleocytoplasmic transport and maintenance of the NPC permeability barrier; found in stable complex with Nup82p, Gle2p and two other FG-nucleoporins (Nup159p and Nup116p); also found in stable complex with Nic96p and two other FG-nucleoproteins (Nup49p and Nup57p)
Top 10 interactors (score): KAP95 (0.999); NUP116 (0.999); MEX67 (0.999); NTF2 (0.999); NUP159 (0.999); NIC96 (0.999); NUP49 (0.999); NUP192 (0.999); NUP57 (0.999); MLP2 (0.998); NUP100 (0.998); NUP2 (0.998); NUP84 (0.998); MLP1 (0.996); NUP170 (0.996); NUP42 (0.995); YRB1 (0.994); NUP145 (0.994); NUP85 (0.994); SRP1 (0.993)
Homologues (species, bitscore): NUP62 (Homo sapiens, 117.1); Nup62 (Mus musculus, 109.4); nup62l (Danio rerio, 125.9); LOC394934 (Xenopus tropicalis, 114.4); Nup62 (Drosophila melanogaster, 85.1); npp-10 (Caenorhabditis elegans, 57.0); EMB2766 (Arabidopsis thaliana, 77.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:348251-350783:+ | gene-YJL041W_AKU4011 | rna-NM_001181474.3_AKU4011 | cds-NP_012494.3_AKU4011 | 97.5 | 97.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:262754-265058:- | gene-YJL041W_BG1 | rna-NM_001181474.3_BG1 | cds-NP_012494.3_BG1 | 87.8 | 88.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:361773-364775:+ | gene-YJL041W_Bruggeman | rna-NM_001181474.3_Bruggeman | cds-NP_012494.3_Bruggeman | 85.0 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:366637-369226:+ | gene-YJL041W_CAT1 | rna-NM_001181474.3_CAT1 | cds-NP_012494.3_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:359904-362436:+ | gene-YJL041W_CBS1585 | rna-NM_001181474.3_CBS1585 | cds-NP_012494.3_CBS1585 | 97.5 | 97.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:378760-381349:+ | gene-YJL041W_CBS436 | rna-NM_001181474.3_CBS436 | cds-NP_012494.3_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:349411-351588:+ | gene-YJL041W_CBS6412 | rna-NM_001181474.3_CBS6412 | cds-NP_012494.3_CBS6412 | 83.1 | 83.3 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:350359-352891:+ | gene-YJL041W_CBS6413 | rna-NM_001181474.3_CBS6413 | cds-NP_012494.3_CBS6413 | 97.5 | 97.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:348267-350571:+ | gene-YJL041W_CENPK1137D | rna-NM_001181474.3_CENPK1137D | cds-NP_012494.3_CENPK1137D | 88.4 | 88.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:352673-354986:+ | gene-YJL041W_EthanolRed | rna-NM_001181474.3_EthanolRed | cds-NP_012494.3_EthanolRed | 88.6 | 88.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:363913-366445:+ | gene-YJL041W_FaliES1 | rna-NM_001181474.3_FaliES1 | cds-NP_012494.3_FaliES1 | 97.4 | 97.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000200.1:48435-50739:- | gene-YJL041W_JAY291 | rna-NM_001181474.3_JAY291 | cds-NP_012494.3_JAY291 | 87.8 | 88.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:362230-365508:+ | gene-YJL041W_MUCL30387 | rna-NM_001181474.3_MUCL30387 | cds-NP_012494.3_MUCL30387 | 77.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:357997-360927:+ | gene-YJL041W_MUCL30388 | rna-NM_001181474.3_MUCL30388 | cds-NP_012494.3_MUCL30388 | 87.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:353237-355769:+ | gene-YJL041W_MUCL39482 | rna-NM_001181474.3_MUCL39482 | cds-NP_012494.3_MUCL39482 | 97.5 | 97.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:359351-361655:+ | gene-YJL041W_MUCL42920 | rna-NM_001181474.3_MUCL42920 | cds-NP_012494.3_MUCL42920 | 87.9 | 88.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:365763-368352:+ | gene-YJL041W_NCIM3186 | rna-NM_001181474.3_NCIM3186 | cds-NP_012494.3_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:351357-353889:+ | gene-YJL041W_NCYC1407 | rna-NM_001181474.3_NCYC1407 | cds-NP_012494.3_NCYC1407 | 97.5 | 97.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:363753-366342:+ | gene-YJL041W_PE2H3 | rna-NM_001181474.3_PE2H3 | cds-NP_012494.3_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:363398-365987:+ | gene-YJL041W_PE2H4 | rna-NM_001181474.3_PE2H4 | cds-NP_012494.3_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:365784-368373:+ | gene-YJL041W_S288C | rna-NM_001181474.3_S288C | cds-NP_012494.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:161283-163872:+ | gene-YJL041W_SA1 | rna-NM_001181474.3_SA1 | cds-NP_012494.3_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:357575-360107:+ | gene-YJL041W_ThermosaccDry | rna-NM_001181474.3_ThermosaccDry | cds-NP_012494.3_ThermosaccDry | 97.6 | 97.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:359512-362498:+ | gene-YJL041W_VR1 | rna-NM_001181474.3_VR1 | cds-NP_012494.3_VR1 | 85.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:338786-341318:+ | gene-YJL041W_ZTW1 | rna-NM_001181474.3_ZTW1 | cds-NP_012494.3_ZTW1 | 97.4 | 97.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:359231-361748:- | gene-YJL041W_Sparadoxus | rna-NM_001181474.3_Sparadoxus | cds-NP_012494.3_Sparadoxus | 78.7 | 92.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |