Gene name: NSE5
Reference locus (S288C): YML023C
Gene biotype: protein_coding
Description: Non-structural maintenance of chromosome element 5; Component of the SMC5-SMC6 complex; this complex plays a key role in the removal of X-shaped DNA structures that arise between sister chromatids during DNA replication and repair
Top 10 interactors (score): KRE29 (0.998); SMC5 (0.996); SMC6 (0.995); MMS21 (0.992); NSE4 (0.986); NSE3 (0.979); NSE1 (0.977); RTT107 (0.795); SLX4 (0.772); SMT3 (0.667); MPH1 (0.648); MUS81 (0.533); UBC9 (0.515); FOB1 (0.478); SLX5 (0.478); MMS4 (0.467); SMC4 (0.464); MDY2 (0.402)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:276587-278257:- | gene-YML023C_AKU4011 | rna-NM_001182381.1_AKU4011 | cds-NP_013689.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:264617-266287:+ | gene-YML023C_BG1 | rna-NM_001182381.1_BG1 | cds-NP_013689.1_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:216540-218210:- | gene-YML023C_Bruggeman | rna-NM_001182381.1_Bruggeman | cds-NP_013689.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:219051-220721:- | gene-YML023C_CAT1 | rna-NM_001182381.1_CAT1 | cds-NP_013689.1_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:209537-211207:- | gene-YML023C_CBS1585 | rna-NM_001182381.1_CBS1585 | cds-NP_013689.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:215071-216741:- | gene-YML023C_CBS436 | rna-NM_001182381.1_CBS436 | cds-NP_013689.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:323274-324944:- | gene-YML023C_CBS6412 | rna-NM_001182381.1_CBS6412 | cds-NP_013689.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:208794-210464:- | gene-YML023C_CBS6413 | rna-NM_001182381.1_CBS6413 | cds-NP_013689.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:221516-223186:- | gene-YML023C_CENPK1137D | rna-NM_001182381.1_CENPK1137D | cds-NP_013689.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:209561-211231:- | gene-YML023C_EthanolRed | rna-NM_001182381.1_EthanolRed | cds-NP_013689.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:212525-214195:- | gene-YML023C_FaliES1 | rna-NM_001182381.1_FaliES1 | cds-NP_013689.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000033.1:222721-224391:+ | gene-YML023C_JAY291 | rna-NM_001182381.1_JAY291 | cds-NP_013689.1_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:214271-215941:- | gene-YML023C_MUCL30387 | rna-NM_001182381.1_MUCL30387 | cds-NP_013689.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:218940-220610:- | gene-YML023C_MUCL30388 | rna-NM_001182381.1_MUCL30388 | cds-NP_013689.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:209822-211492:- | gene-YML023C_MUCL39482 | rna-NM_001182381.1_MUCL39482 | cds-NP_013689.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:215376-217046:- | gene-YML023C_MUCL42920 | rna-NM_001182381.1_MUCL42920 | cds-NP_013689.1_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:226948-228618:- | gene-YML023C_NCIM3186 | rna-NM_001182381.1_NCIM3186 | cds-NP_013689.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:209763-211433:- | gene-YML023C_NCYC1407 | rna-NM_001182381.1_NCYC1407 | cds-NP_013689.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:215662-217332:- | gene-YML023C_PE2H3 | rna-NM_001182381.1_PE2H3 | cds-NP_013689.1_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:221757-223427:- | gene-YML023C_PE2H4 | rna-NM_001182381.1_PE2H4 | cds-NP_013689.1_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:226994-228664:- | gene-YML023C_S288C | rna-NM_001182381.1_S288C | cds-NP_013689.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000088.1:10189-11859:+ | gene-YML023C_SA1 | rna-NM_001182381.1_SA1 | cds-NP_013689.1_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:209598-211268:- | gene-YML023C_ThermosaccDry | rna-NM_001182381.1_ThermosaccDry | cds-NP_013689.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:213603-215273:- | gene-YML023C_VR1 | rna-NM_001182381.1_VR1 | cds-NP_013689.1_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:188652-190322:- | gene-YML023C_ZTW1 | rna-NM_001182381.1_ZTW1 | cds-NP_013689.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:220372-222042:- | gene-YML023C_Sparadoxus | rna-NM_001182381.1_Sparadoxus | cds-NP_013689.1_Sparadoxus | 88.0 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |