Gene name: NSE3
Reference locus (S288C): YDR288W
Gene biotype: protein_coding
Description: Non-structural maintenance of chromosome element 3; Component of the SMC5-SMC6 complex; this complex plays a key role in the removal of X-shaped DNA structures that arise between sister chromatids during DNA replication and repair; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): NSE4 (0.999); NSE1 (0.999); MMS21 (0.999); SMC6 (0.999); SMC5 (0.999); KRE29 (0.99); SMC3 (0.986); NSE5 (0.979); SMT3 (0.96); UBC9 (0.949); SMC1 (0.936); MCD1 (0.926); OLA1 (0.9); IRR1 (0.9); VTI1 (0.9); RIF2 (0.78); MUS81 (0.741); SMC4 (0.723); TOP3 (0.71); RAD18 (0.707)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:989173-990084:+ | gene-YDR288W_AKU4011 | rna-NM_001180596.1_AKU4011 | cds-NP_010574.1_AKU4011 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:141464-142375:- | gene-YDR288W_BG1 | rna-NM_001180596.1_BG1 | cds-NP_010574.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1016453-1017364:+ | gene-YDR288W_Bruggeman | rna-NM_001180596.1_Bruggeman | cds-NP_010574.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1003465-1004376:+ | gene-YDR288W_CAT1 | rna-NM_001180596.1_CAT1 | cds-NP_010574.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:983618-984529:+ | gene-YDR288W_CBS1585 | rna-NM_001180596.1_CBS1585 | cds-NP_010574.1_CBS1585 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1001993-1002904:+ | gene-YDR288W_CBS436 | rna-NM_001180596.1_CBS436 | cds-NP_010574.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:980300-981211:+ | gene-YDR288W_CBS6412 | rna-NM_001180596.1_CBS6412 | cds-NP_010574.1_CBS6412 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1001538-1002449:+ | gene-YDR288W_CBS6413 | rna-NM_001180596.1_CBS6413 | cds-NP_010574.1_CBS6413 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1035841-1036752:+ | gene-YDR288W_CENPK1137D | rna-NM_001180596.1_CENPK1137D | cds-NP_010574.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:987712-988623:+ | gene-YDR288W_EthanolRed | rna-NM_001180596.1_EthanolRed | cds-NP_010574.1_EthanolRed | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:995914-996825:+ | gene-YDR288W_FaliES1 | rna-NM_001180596.1_FaliES1 | cds-NP_010574.1_FaliES1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000130.1:13751-14662:+ | gene-YDR288W_JAY291 | rna-NM_001180596.1_JAY291 | cds-NP_010574.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1001969-1002880:+ | gene-YDR288W_MUCL30387 | rna-NM_001180596.1_MUCL30387 | cds-NP_010574.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:989036-989947:+ | gene-YDR288W_MUCL30388 | rna-NM_001180596.1_MUCL30388 | cds-NP_010574.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:975424-976335:+ | gene-YDR288W_MUCL39482 | rna-NM_001180596.1_MUCL39482 | cds-NP_010574.1_MUCL39482 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:915416-916327:+ | gene-YDR288W_MUCL42920 | rna-NM_001180596.1_MUCL42920 | cds-NP_010574.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1037118-1038029:+ | gene-YDR288W_NCIM3186 | rna-NM_001180596.1_NCIM3186 | cds-NP_010574.1_NCIM3186 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:988715-989626:+ | gene-YDR288W_NCYC1407 | rna-NM_001180596.1_NCYC1407 | cds-NP_010574.1_NCYC1407 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:999723-1000634:+ | gene-YDR288W_PE2H3 | rna-NM_001180596.1_PE2H3 | cds-NP_010574.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1005308-1006219:+ | gene-YDR288W_PE2H4 | rna-NM_001180596.1_PE2H4 | cds-NP_010574.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1037195-1038106:+ | gene-YDR288W_S288C | rna-NM_001180596.1_S288C | cds-NP_010574.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000025.1:13930-14841:+ | gene-YDR288W_SA1 | rna-NM_001180596.1_SA1 | cds-NP_010574.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1000199-1001110:+ | gene-YDR288W_ThermosaccDry | rna-NM_001180596.1_ThermosaccDry | cds-NP_010574.1_ThermosaccDry | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1016149-1017060:+ | gene-YDR288W_VR1 | rna-NM_001180596.1_VR1 | cds-NP_010574.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:44323-45234:+ | gene-YDR288W_ZTW1 | rna-NM_001180596.1_ZTW1 | cds-NP_010574.1_ZTW1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:995722-996639:+ | gene-YDR288W_Sparadoxus | rna-NM_001180596.1_Sparadoxus | cds-NP_010574.1_Sparadoxus | 87.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |