Gene name: NSE1
Reference locus (S288C): YLR007W
Gene biotype: protein_coding
Description: Non-structural maintenance of chromosomes element 1; Component of the SMC5-SMC6 complex; this complex plays a key role in the removal of X-shaped DNA structures that arise between sister chromatids during DNA replication and repair; Belongs to the NSE1 family
Top 10 interactors (score): SMC5 (0.999); SMC6 (0.999); NSE3 (0.999); MMS21 (0.999); NSE4 (0.999); KRE29 (0.986); NSE5 (0.977); SMT3 (0.967); UBC9 (0.95); SMC3 (0.946); SMC1 (0.938); MCD1 (0.902); IRR1 (0.9); SGS1 (0.789); MUS81 (0.749); SMC2 (0.714); RAD51 (0.678); ESC8 (0.67); TOP3 (0.627); RRM3 (0.61)
Homologues (species, bitscore): NSMCE1 (Homo sapiens, 53.5); Nsmce1 (Mus musculus, 52.8); nsmce1 (Danio rerio, 59.3); nsmce1 (Xenopus tropicalis, 51.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:152373-153383:+ | gene-YLR007W_AKU4011 | rna-NM_001181894.1_AKU4011 | cds-NP_013107.1_AKU4011 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:115580-116590:+ | gene-YLR007W_BG1 | rna-NM_001181894.1_BG1 | cds-NP_013107.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:162743-163753:+ | gene-YLR007W_Bruggeman | rna-NM_001181894.1_Bruggeman | cds-NP_013107.1_Bruggeman | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:163062-164072:+ | gene-YLR007W_CAT1 | rna-NM_001181894.1_CAT1 | cds-NP_013107.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:159971-160981:+ | gene-YLR007W_CBS1585 | rna-NM_001181894.1_CBS1585 | cds-NP_013107.1_CBS1585 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:150595-151605:+ | gene-YLR007W_CBS436 | rna-NM_001181894.1_CBS436 | cds-NP_013107.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:158742-159752:+ | gene-YLR007W_CBS6412 | rna-NM_001181894.1_CBS6412 | cds-NP_013107.1_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:160238-161248:+ | gene-YLR007W_CBS6413 | rna-NM_001181894.1_CBS6413 | cds-NP_013107.1_CBS6413 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:149654-150664:+ | gene-YLR007W_CENPK1137D | rna-NM_001181894.1_CENPK1137D | cds-NP_013107.1_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:152393-153403:+ | gene-YLR007W_EthanolRed | rna-NM_001181894.1_EthanolRed | cds-NP_013107.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:151964-152974:+ | gene-YLR007W_FaliES1 | rna-NM_001181894.1_FaliES1 | cds-NP_013107.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000083.1:2622-3632:- | gene-YLR007W_JAY291 | rna-NM_001181894.1_JAY291 | cds-NP_013107.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:160099-161109:+ | gene-YLR007W_MUCL30387 | rna-NM_001181894.1_MUCL30387 | cds-NP_013107.1_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:165796-166806:+ | gene-YLR007W_MUCL30388 | rna-NM_001181894.1_MUCL30388 | cds-NP_013107.1_MUCL30388 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:160443-161453:+ | gene-YLR007W_MUCL39482 | rna-NM_001181894.1_MUCL39482 | cds-NP_013107.1_MUCL39482 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:160368-161378:+ | gene-YLR007W_MUCL42920 | rna-NM_001181894.1_MUCL42920 | cds-NP_013107.1_MUCL42920 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:164366-165376:+ | gene-YLR007W_NCIM3186 | rna-NM_001181894.1_NCIM3186 | cds-NP_013107.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:152046-153056:+ | gene-YLR007W_NCYC1407 | rna-NM_001181894.1_NCYC1407 | cds-NP_013107.1_NCYC1407 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:158390-159400:+ | gene-YLR007W_PE2H3 | rna-NM_001181894.1_PE2H3 | cds-NP_013107.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:158131-159141:+ | gene-YLR007W_PE2H4 | rna-NM_001181894.1_PE2H4 | cds-NP_013107.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:164392-165402:+ | gene-YLR007W_S288C | rna-NM_001181894.1_S288C | cds-NP_013107.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000062.1:67589-68599:+ | gene-YLR007W_SA1 | rna-NM_001181894.1_SA1 | cds-NP_013107.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:152467-153477:+ | gene-YLR007W_ThermosaccDry | rna-NM_001181894.1_ThermosaccDry | cds-NP_013107.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:165843-166853:+ | gene-YLR007W_VR1 | rna-NM_001181894.1_VR1 | cds-NP_013107.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:151798-152808:+ | gene-YLR007W_ZTW1 | rna-NM_001181894.1_ZTW1 | cds-NP_013107.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:160400-161410:+ | gene-YLR007W_Sparadoxus | rna-NM_001181894.1_Sparadoxus | cds-NP_013107.1_Sparadoxus | 88.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |