Gene name: NSA2
Reference locus (S288C): YER126C
Gene biotype: protein_coding
Description: Ribosome biogenesis protein NSA2; Protein constituent of 66S pre-ribosomal particles; contributes to processing of the 27S pre-rRNA; recruited by ribosomal proteins L17, L35, and L37 to assembling ribosomes after 27SB pre-rRNA is generated, immediately preceding removal of ITS2
Top 10 interactors (score): NMD3 (0.999); RPL3 (0.999); SDA1 (0.999); NOP53 (0.999); BUD20 (0.999); RPL2A (0.999); NOP4 (0.999); TIF6 (0.999); NOG1 (0.999); CIC1 (0.999); EBP2 (0.999); NIP7 (0.999); NOP7 (0.999); MAK16 (0.999); NOC2 (0.999); BRX1 (0.999); PUF6 (0.999); RLP7 (0.999); RSA4 (0.999); RIX1 (0.999)
Homologues (species, bitscore): NSA2 (Homo sapiens, 328.9); Nsa2 (Mus musculus, 328.2); nsa2 (Danio rerio, 328.9); nsa2 (Xenopus tropicalis, 333.6); Ip259 (Drosophila melanogaster, 324.3); W09C5.1 (Caenorhabditis elegans, 334.3); AT5G06360 (Arabidopsis thaliana, 330.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:407271-408056:- | gene-YER126C_AKU4011 | rna-NM_001179016.1_AKU4011 | cds-NP_011052.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:17598-18383:+ | gene-YER126C_BG1 | rna-NM_001179016.1_BG1 | cds-NP_011052.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:417737-418522:- | gene-YER126C_Bruggeman | rna-NM_001179016.1_Bruggeman | cds-NP_011052.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:412977-413762:- | gene-YER126C_CAT1 | rna-NM_001179016.1_CAT1 | cds-NP_011052.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:406666-407451:- | gene-YER126C_CBS1585 | rna-NM_001179016.1_CBS1585 | cds-NP_011052.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:409370-410155:- | gene-YER126C_CBS436 | rna-NM_001179016.1_CBS436 | cds-NP_011052.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:405744-406529:- | gene-YER126C_CBS6412 | rna-NM_001179016.1_CBS6412 | cds-NP_011052.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:412587-413372:- | gene-YER126C_CBS6413 | rna-NM_001179016.1_CBS6413 | cds-NP_011052.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:411159-411944:- | gene-YER126C_CENPK1137D | rna-NM_001179016.1_CENPK1137D | cds-NP_011052.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:407115-407900:- | gene-YER126C_EthanolRed | rna-NM_001179016.1_EthanolRed | cds-NP_011052.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:407596-408381:- | gene-YER126C_FaliES1 | rna-NM_001179016.1_FaliES1 | cds-NP_011052.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000028.1:15818-16603:- | gene-YER126C_JAY291 | rna-NM_001179016.1_JAY291 | cds-NP_011052.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:414686-415471:- | gene-YER126C_MUCL30387 | rna-NM_001179016.1_MUCL30387 | cds-NP_011052.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:409632-410417:- | gene-YER126C_MUCL30388 | rna-NM_001179016.1_MUCL30388 | cds-NP_011052.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:405691-406476:- | gene-YER126C_MUCL39482 | rna-NM_001179016.1_MUCL39482 | cds-NP_011052.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:414178-414963:- | gene-YER126C_MUCL42920 | rna-NM_001179016.1_MUCL42920 | cds-NP_011052.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:413393-414178:- | gene-YER126C_NCIM3186 | rna-NM_001179016.1_NCIM3186 | cds-NP_011052.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:411224-412009:- | gene-YER126C_NCYC1407 | rna-NM_001179016.1_NCYC1407 | cds-NP_011052.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:421768-422553:- | gene-YER126C_PE2H3 | rna-NM_001179016.1_PE2H3 | cds-NP_011052.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:411709-412494:- | gene-YER126C_PE2H4 | rna-NM_001179016.1_PE2H4 | cds-NP_011052.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:413394-414179:- | gene-YER126C_S288C | rna-NM_001179016.1_S288C | cds-NP_011052.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000023.1:122995-123780:- | gene-YER126C_SA1 | rna-NM_001179016.1_SA1 | cds-NP_011052.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:408394-409179:- | gene-YER126C_ThermosaccDry | rna-NM_001179016.1_ThermosaccDry | cds-NP_011052.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:409446-410231:- | gene-YER126C_VR1 | rna-NM_001179016.1_VR1 | cds-NP_011052.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:405523-406308:- | gene-YER126C_ZTW1 | rna-NM_001179016.1_ZTW1 | cds-NP_011052.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:409348-410133:- | gene-YER126C_Sparadoxus | rna-NM_001179016.1_Sparadoxus | cds-NP_011052.1_Sparadoxus | 94.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |