Gene name: NOP9
Reference locus (S288C): YJL010C
Gene biotype: protein_coding
Description: Nucleolar protein 9; Essential subunit of U3-containing 90S preribosome; involved in production of 18S rRNA and assembly of small ribosomal subunit; also part of pre-40S ribosome and required for its export into cytoplasm; binds RNA and contains pumilio domain; Belongs to the NOP9 family
Top 10 interactors (score): PRP43 (0.999); MRD1 (0.999); ROK1 (0.999); NOB1 (0.999); DIP2 (0.999); KRE33 (0.999); ENP2 (0.999); UTP10 (0.999); UTP21 (0.999); PWP2 (0.999); FCF1 (0.999); TSR1 (0.999); ENP1 (0.999); HAS1 (0.999); RRP12 (0.999); PUF6 (0.999); UTP4 (0.999); UTP13 (0.999); BMS1 (0.999); BFR2 (0.999)
Homologues (species, bitscore): NOP9 (Homo sapiens, 106.7); Nop9 (Mus musculus, 105.5); nop9 (Danio rerio, 102.1); nop9 (Xenopus tropicalis, 131.7); CG11123 (Drosophila melanogaster, 86.3); PUM23 (Arabidopsis thaliana, 60.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:400716-402716:- | gene-YJL010C_AKU4011 | rna-NM_001181444.3_AKU4011 | cds-NP_012524.3_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:210021-212021:+ | gene-YJL010C_BG1 | rna-NM_001181444.3_BG1 | cds-NP_012524.3_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:414800-416800:- | gene-YJL010C_Bruggeman | rna-NM_001181444.3_Bruggeman | cds-NP_012524.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:418751-420751:- | gene-YJL010C_CAT1 | rna-NM_001181444.3_CAT1 | cds-NP_012524.3_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:412303-414303:- | gene-YJL010C_CBS1585 | rna-NM_001181444.3_CBS1585 | cds-NP_012524.3_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:431272-433272:- | gene-YJL010C_CBS436 | rna-NM_001181444.3_CBS436 | cds-NP_012524.3_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:400530-402530:- | gene-YJL010C_CBS6412 | rna-NM_001181444.3_CBS6412 | cds-NP_012524.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:402743-404743:- | gene-YJL010C_CBS6413 | rna-NM_001181444.3_CBS6413 | cds-NP_012524.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:399983-401983:- | gene-YJL010C_CENPK1137D | rna-NM_001181444.3_CENPK1137D | cds-NP_012524.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:405678-407678:- | gene-YJL010C_EthanolRed | rna-NM_001181444.3_EthanolRed | cds-NP_012524.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:416822-418822:- | gene-YJL010C_FaliES1 | rna-NM_001181444.3_FaliES1 | cds-NP_012524.3_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000338.1:5045-7045:+ | gene-YJL010C_JAY291 | rna-NM_001181444.3_JAY291 | cds-NP_012524.3_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:415139-417139:- | gene-YJL010C_MUCL30387 | rna-NM_001181444.3_MUCL30387 | cds-NP_012524.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:411694-413694:- | gene-YJL010C_MUCL30388 | rna-NM_001181444.3_MUCL30388 | cds-NP_012524.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:405620-407620:- | gene-YJL010C_MUCL39482 | rna-NM_001181444.3_MUCL39482 | cds-NP_012524.3_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:411073-413073:- | gene-YJL010C_MUCL42920 | rna-NM_001181444.3_MUCL42920 | cds-NP_012524.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:417541-419541:- | gene-YJL010C_NCIM3186 | rna-NM_001181444.3_NCIM3186 | cds-NP_012524.3_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:403533-405533:- | gene-YJL010C_NCYC1407 | rna-NM_001181444.3_NCYC1407 | cds-NP_012524.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:416017-418017:- | gene-YJL010C_PE2H3 | rna-NM_001181444.3_PE2H3 | cds-NP_012524.3_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:415626-417626:- | gene-YJL010C_PE2H4 | rna-NM_001181444.3_PE2H4 | cds-NP_012524.3_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:417562-419562:- | gene-YJL010C_S288C | rna-NM_001181444.3_S288C | cds-NP_012524.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:213553-215553:- | gene-YJL010C_SA1 | rna-NM_001181444.3_SA1 | cds-NP_012524.3_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:410480-412480:- | gene-YJL010C_ThermosaccDry | rna-NM_001181444.3_ThermosaccDry | cds-NP_012524.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:412173-414173:- | gene-YJL010C_VR1 | rna-NM_001181444.3_VR1 | cds-NP_012524.3_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:390491-392491:- | gene-YJL010C_ZTW1 | rna-NM_001181444.3_ZTW1 | cds-NP_012524.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:415491-417491:- | gene-YJL010C_Sparadoxus | rna-NM_001181444.3_Sparadoxus | cds-NP_012524.3_Sparadoxus | 91.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |