Gene name: NOP6
Reference locus (S288C): YDL213C
Gene biotype: protein_coding
Description: Nucleolar protein 6; rRNA-binding protein required for 40S ribosomal subunit biogenesis; contains an RNA recognition motif (RRM); hydrophilin essential to overcome the stress of the desiccation-rehydration process; NOP6 may be a fungal-specific gene as no homologs have been yet identified in higher eukaryotes
Top 10 interactors (score): KRR1 (0.995); BMS1 (0.993); RCL1 (0.993); UTP21 (0.992); ENP2 (0.991); RRP5 (0.989); CBF5 (0.988); NOP14 (0.987); MRD1 (0.985); UTP20 (0.984); BFR2 (0.983); KRI1 (0.983); ROK1 (0.983); ECM16 (0.981); EMG1 (0.98); PWP2 (0.979); MPP10 (0.978); CMS1 (0.978); EBP2 (0.974); NOP58 (0.971)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:60775-61452:- | gene-YDL213C_AKU4011 | rna-NM_001180273.1_AKU4011 | cds-NP_010068.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000077.1:5620-6297:+ | gene-YDL213C_BG1 | rna-NM_001180273.1_BG1 | cds-NP_010068.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:77167-77844:- | gene-YDL213C_Bruggeman | rna-NM_001180273.1_Bruggeman | cds-NP_010068.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:296301-296978:- | gene-YDL213C_CAT1 | rna-NM_001180273.1_CAT1 | cds-NP_010068.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:59650-60327:- | gene-YDL213C_CBS1585 | rna-NM_001180273.1_CBS1585 | cds-NP_010068.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:274531-275208:- | gene-YDL213C_CBS436 | rna-NM_001180273.1_CBS436 | cds-NP_010068.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:59762-60439:- | gene-YDL213C_CBS6412 | rna-NM_001180273.1_CBS6412 | cds-NP_010068.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:77285-77962:- | gene-YDL213C_CBS6413 | rna-NM_001180273.1_CBS6413 | cds-NP_010068.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:75955-76632:- | gene-YDL213C_CENPK1137D | rna-NM_001180273.1_CENPK1137D | cds-NP_010068.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:73220-73897:- | gene-YDL213C_EthanolRed | rna-NM_001180273.1_EthanolRed | cds-NP_010068.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:77547-78224:- | gene-YDL213C_FaliES1 | rna-NM_001180273.1_FaliES1 | cds-NP_010068.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000213.1:31874-32551:- | gene-YDL213C_JAY291 | rna-NM_001180273.1_JAY291 | cds-NP_010068.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:75399-76076:- | gene-YDL213C_MUCL30387 | rna-NM_001180273.1_MUCL30387 | cds-NP_010068.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:283217-283894:- | gene-YDL213C_MUCL30388 | rna-NM_001180273.1_MUCL30388 | cds-NP_010068.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:60493-61170:- | gene-YDL213C_MUCL39482 | rna-NM_001180273.1_MUCL39482 | cds-NP_010068.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:76549-77226:- | gene-YDL213C_MUCL42920 | rna-NM_001180273.1_MUCL42920 | cds-NP_010068.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:77212-77889:- | gene-YDL213C_NCIM3186 | rna-NM_001180273.1_NCIM3186 | cds-NP_010068.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:60449-61126:- | gene-YDL213C_NCYC1407 | rna-NM_001180273.1_NCYC1407 | cds-NP_010068.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:67487-68164:- | gene-YDL213C_PE2H3 | rna-NM_001180273.1_PE2H3 | cds-NP_010068.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:67497-68174:- | gene-YDL213C_PE2H4 | rna-NM_001180273.1_PE2H4 | cds-NP_010068.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:77289-77966:- | gene-YDL213C_S288C | rna-NM_001180273.1_S288C | cds-NP_010068.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000094.1:31682-32359:- | gene-YDL213C_SA1 | rna-NM_001180273.1_SA1 | cds-NP_010068.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:77302-77979:- | gene-YDL213C_ThermosaccDry | rna-NM_001180273.1_ThermosaccDry | cds-NP_010068.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:78254-78931:- | gene-YDL213C_VR1 | rna-NM_001180273.1_VR1 | cds-NP_010068.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:76472-77149:- | gene-YDL213C_ZTW1 | rna-NM_001180273.1_ZTW1 | cds-NP_010068.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:79837-80511:- | gene-YDL213C_Sparadoxus | rna-NM_001180273.1_Sparadoxus | cds-NP_010068.1_Sparadoxus | 90.1 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |