Gene name: NOP58
Reference locus (S288C): YOR310C
Gene biotype: protein_coding
Description: Nucleolar protein 58; Protein involved in producing mature rRNAs and snoRNAs; involved in pre-rRNA processing, 18S rRNA synthesis, and snoRNA synthesis; component of the small subunit processome complex, which is required for processing of pre-18S rRNA
Top 10 interactors (score): BRX1 (0.999); CBF5 (0.999); NOC2 (0.999); SAS10 (0.999); ENP1 (0.999); KRR1 (0.999); FCF1 (0.999); BUD21 (0.999); DIM1 (0.999); UTP11 (0.999); UTP4 (0.999); UTP6 (0.999); BMS1 (0.999); SNU13 (0.999); MAK21 (0.999); ECM16 (0.999); EMG1 (0.999); CIC1 (0.999); RRP5 (0.999); BFR2 (0.999)
Homologues (species, bitscore): NOP58 (Homo sapiens, 458.4); Nop58 (Mus musculus, 457.6); nop58 (Danio rerio, 458.0); nop58 (Xenopus tropicalis, 464.5); nop5 (Drosophila melanogaster, 437.2); nol-5 (Caenorhabditis elegans, 419.1); AT3G05060 (Arabidopsis thaliana, 471.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:887300-888844:- | gene-YOR310C_AKU4011 | rna-NM_001183730.1_AKU4011 | cds-NP_014955.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:289316-290851:- | gene-YOR310C_BG1 | rna-NM_001183730.1_BG1 | cds-NP_014955.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:872715-874259:- | gene-YOR310C_Bruggeman | rna-NM_001183730.1_Bruggeman | cds-NP_014955.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:873434-874969:- | gene-YOR310C_CAT1 | rna-NM_001183730.1_CAT1 | cds-NP_014955.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:871111-872664:- | gene-YOR310C_CBS1585 | rna-NM_001183730.1_CBS1585 | cds-NP_014955.1_CBS1585 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:868957-870492:- | gene-YOR310C_CBS436 | rna-NM_001183730.1_CBS436 | cds-NP_014955.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:866828-868372:- | gene-YOR310C_CBS6412 | rna-NM_001183730.1_CBS6412 | cds-NP_014955.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:875956-877500:- | gene-YOR310C_CBS6413 | rna-NM_001183730.1_CBS6413 | cds-NP_014955.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:896601-898136:- | gene-YOR310C_CENPK1137D | rna-NM_001183730.1_CENPK1137D | cds-NP_014955.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:863209-864762:- | gene-YOR310C_EthanolRed | rna-NM_001183730.1_EthanolRed | cds-NP_014955.1_EthanolRed | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:868832-870385:- | gene-YOR310C_FaliES1 | rna-NM_001183730.1_FaliES1 | cds-NP_014955.1_FaliES1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000078.1:132885-134420:+ | gene-YOR310C_JAY291 | rna-NM_001183730.1_JAY291 | cds-NP_014955.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:876963-878498:- | gene-YOR310C_MUCL30387 | rna-NM_001183730.1_MUCL30387 | cds-NP_014955.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:884962-886506:- | gene-YOR310C_MUCL30388 | rna-NM_001183730.1_MUCL30388 | cds-NP_014955.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:877656-879209:- | gene-YOR310C_MUCL39482 | rna-NM_001183730.1_MUCL39482 | cds-NP_014955.1_MUCL39482 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:887143-888678:- | gene-YOR310C_MUCL42920 | rna-NM_001183730.1_MUCL42920 | cds-NP_014955.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:896714-898249:- | gene-YOR310C_NCIM3186 | rna-NM_001183730.1_NCIM3186 | cds-NP_014955.1_NCIM3186 | 96.0 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:878657-880210:- | gene-YOR310C_NCYC1407 | rna-NM_001183730.1_NCYC1407 | cds-NP_014955.1_NCYC1407 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:876896-878431:- | gene-YOR310C_PE2H3 | rna-NM_001183730.1_PE2H3 | cds-NP_014955.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:893248-894783:- | gene-YOR310C_PE2H4 | rna-NM_001183730.1_PE2H4 | cds-NP_014955.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:896825-898360:- | gene-YOR310C_S288C | rna-NM_001183730.1_S288C | cds-NP_014955.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000016.1:7147-8682:- | gene-YOR310C_SA1 | rna-NM_001183730.1_SA1 | cds-NP_014955.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:868015-869568:- | gene-YOR310C_ThermosaccDry | rna-NM_001183730.1_ThermosaccDry | cds-NP_014955.1_ThermosaccDry | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:931318-932853:- | gene-YOR310C_VR1 | rna-NM_001183730.1_VR1 | cds-NP_014955.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:600894-602438:- | gene-YOR310C_ZTW1 | rna-NM_001183730.1_ZTW1 | cds-NP_014955.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:875118-876644:- | gene-YOR310C_Sparadoxus | rna-NM_001183730.1_Sparadoxus | cds-NP_014955.1_Sparadoxus | 93.3 | 99.4 | Verified | 1 | 1 | 0 | False | False | False | True | False |