Gene name: NOP56
Reference locus (S288C): YLR197W
Gene biotype: protein_coding
Description: Nucleolar protein 56; Essential evolutionarily-conserved nucleolar protein; component of the box C/D snoRNP complexes that direct 2'-O-methylation of pre-rRNA during its maturation; overexpression causes spindle orientation defects
Top 10 interactors (score): DIM1 (0.999); UTP10 (0.999); UTP7 (0.999); NOP14 (0.999); UTP21 (0.999); UTP20 (0.999); NOC4 (0.999); UTP14 (0.999); BUD21 (0.999); KRR1 (0.999); ENP1 (0.999); SAS10 (0.999); NOC2 (0.999); CBF5 (0.999); UTP4 (0.999); UTP6 (0.999); BMS1 (0.999); NSR1 (0.999); BFR2 (0.999); RRP5 (0.999)
Homologues (species, bitscore): NOP56 (Homo sapiens, 484.6); Nop56 (Mus musculus, 479.6); nop56 (Danio rerio, 487.6); nop56 (Xenopus tropicalis, 423.3); Nop56 (Drosophila melanogaster, 487.3); K07C5.4 (Caenorhabditis elegans, 452.6); AT3G12860 (Arabidopsis thaliana, 497.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:500215-501729:+ | gene-YLR197W_AKU4011 | rna-NM_001182084.1_AKU4011 | cds-NP_013298.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000177.1:57398-58912:+ | gene-YLR197W_BG1 | rna-NM_001182084.1_BG1 | cds-NP_013298.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:540470-541984:+ | gene-YLR197W_Bruggeman | rna-NM_001182084.1_Bruggeman | cds-NP_013298.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:540061-541575:+ | gene-YLR197W_CAT1 | rna-NM_001182084.1_CAT1 | cds-NP_013298.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:535712-537226:+ | gene-YLR197W_CBS1585 | rna-NM_001182084.1_CBS1585 | cds-NP_013298.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:525855-527369:+ | gene-YLR197W_CBS436 | rna-NM_001182084.1_CBS436 | cds-NP_013298.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:504269-505783:+ | gene-YLR197W_CBS6412 | rna-NM_001182084.1_CBS6412 | cds-NP_013298.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:536004-537518:+ | gene-YLR197W_CBS6413 | rna-NM_001182084.1_CBS6413 | cds-NP_013298.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:530742-532256:+ | gene-YLR197W_CENPK1137D | rna-NM_001182084.1_CENPK1137D | cds-NP_013298.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:499742-501256:+ | gene-YLR197W_EthanolRed | rna-NM_001182084.1_EthanolRed | cds-NP_013298.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:528669-530183:+ | gene-YLR197W_FaliES1 | rna-NM_001182084.1_FaliES1 | cds-NP_013298.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000004.1:55571-57085:+ | gene-YLR197W_JAY291 | rna-NM_001182084.1_JAY291 | cds-NP_013298.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:540488-542002:+ | gene-YLR197W_MUCL30387 | rna-NM_001182084.1_MUCL30387 | cds-NP_013298.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:545423-546937:+ | gene-YLR197W_MUCL30388 | rna-NM_001182084.1_MUCL30388 | cds-NP_013298.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:536693-538207:+ | gene-YLR197W_MUCL39482 | rna-NM_001182084.1_MUCL39482 | cds-NP_013298.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:537192-538706:+ | gene-YLR197W_MUCL42920 | rna-NM_001182084.1_MUCL42920 | cds-NP_013298.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:546071-547585:+ | gene-YLR197W_NCIM3186 | rna-NM_001182084.1_NCIM3186 | cds-NP_013298.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:529122-530636:+ | gene-YLR197W_NCYC1407 | rna-NM_001182084.1_NCYC1407 | cds-NP_013298.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:533360-534874:+ | gene-YLR197W_PE2H3 | rna-NM_001182084.1_PE2H3 | cds-NP_013298.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:533104-534618:+ | gene-YLR197W_PE2H4 | rna-NM_001182084.1_PE2H4 | cds-NP_013298.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:546097-547611:+ | gene-YLR197W_S288C | rna-NM_001182084.1_S288C | cds-NP_013298.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000042.1:55628-57142:+ | gene-YLR197W_SA1 | rna-NM_001182084.1_SA1 | cds-NP_013298.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:531172-532686:+ | gene-YLR197W_ThermosaccDry | rna-NM_001182084.1_ThermosaccDry | cds-NP_013298.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:542471-543985:+ | gene-YLR197W_VR1 | rna-NM_001182084.1_VR1 | cds-NP_013298.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000024.1:55460-56974:+ | gene-YLR197W_ZTW1 | rna-NM_001182084.1_ZTW1 | cds-NP_013298.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:517262-518776:+ | gene-YLR197W_Sparadoxus | rna-NM_001182084.1_Sparadoxus | cds-NP_013298.1_Sparadoxus | 94.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |