Gene name: NOP4
Reference locus (S288C): YPL043W
Gene biotype: protein_coding
Description: Mrna-binding ribosome biosynthesis protein nop4; Nucleolar protein; essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis; constituent of 66S pre-ribosomal particles; contains four RNA recognition motifs (RRMs)
Top 10 interactors (score): EBP2 (0.999); NUG1 (0.999); UTP14 (0.999); SSF1 (0.999); ERB1 (0.999); RRP15 (0.999); DBP9 (0.999); DBP3 (0.999); RPF2 (0.999); YTM1 (0.999); SPB1 (0.999); RRP5 (0.999); NOG1 (0.999); MRT4 (0.999); CIC1 (0.999); MAK21 (0.999); NOC3 (0.999); RLP7 (0.999); DBP10 (0.999); NOP7 (0.999)
Homologues (species, bitscore): RBM28 (Homo sapiens, 209.5); Rbm28 (Mus musculus, 211.8); rbm28 (Danio rerio, 195.7); rbm28 (Xenopus tropicalis, 178.7); CG4806 (Drosophila melanogaster, 159.8); rbm-28 (Caenorhabditis elegans, 130.6); AT2G21440 (Arabidopsis thaliana, 135.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:441439-443496:+ | gene-YPL043W_AKU4011 | rna-NM_001183857.1_AKU4011 | cds-NP_015282.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:453949-456006:- | gene-YPL043W_BG1 | rna-NM_001183857.1_BG1 | cds-NP_015282.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:518380-520437:+ | gene-YPL043W_Bruggeman | rna-NM_001183857.1_Bruggeman | cds-NP_015282.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:558066-560123:+ | gene-YPL043W_CAT1 | rna-NM_001183857.1_CAT1 | cds-NP_015282.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:445507-447564:+ | gene-YPL043W_CBS1585 | rna-NM_001183857.1_CBS1585 | cds-NP_015282.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:459625-461682:+ | gene-YPL043W_CBS436 | rna-NM_001183857.1_CBS436 | cds-NP_015282.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:449697-451754:+ | gene-YPL043W_CBS6412 | rna-NM_001183857.1_CBS6412 | cds-NP_015282.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:442058-444115:+ | gene-YPL043W_CBS6413 | rna-NM_001183857.1_CBS6413 | cds-NP_015282.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:469916-471973:+ | gene-YPL043W_CENPK1137D | rna-NM_001183857.1_CENPK1137D | cds-NP_015282.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:439795-441852:+ | gene-YPL043W_EthanolRed | rna-NM_001183857.1_EthanolRed | cds-NP_015282.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:447625-449682:+ | gene-YPL043W_FaliES1 | rna-NM_001183857.1_FaliES1 | cds-NP_015282.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000283.1:56216-58273:+ | gene-YPL043W_JAY291 | rna-NM_001183857.1_JAY291 | cds-NP_015282.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:459314-461371:+ | gene-YPL043W_MUCL30387 | rna-NM_001183857.1_MUCL30387 | cds-NP_015282.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:458455-460512:+ | gene-YPL043W_MUCL30388 | rna-NM_001183857.1_MUCL30388 | cds-NP_015282.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:438823-440880:+ | gene-YPL043W_MUCL39482 | rna-NM_001183857.1_MUCL39482 | cds-NP_015282.1_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:497418-499475:+ | gene-YPL043W_MUCL42920 | rna-NM_001183857.1_MUCL42920 | cds-NP_015282.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:469922-471979:+ | gene-YPL043W_NCIM3186 | rna-NM_001183857.1_NCIM3186 | cds-NP_015282.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:446103-448160:+ | gene-YPL043W_NCYC1407 | rna-NM_001183857.1_NCYC1407 | cds-NP_015282.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:452710-454767:+ | gene-YPL043W_PE2H3 | rna-NM_001183857.1_PE2H3 | cds-NP_015282.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:452325-454382:+ | gene-YPL043W_PE2H4 | rna-NM_001183857.1_PE2H4 | cds-NP_015282.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:469939-471996:+ | gene-YPL043W_S288C | rna-NM_001183857.1_S288C | cds-NP_015282.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000077.1:7767-9824:+ | gene-YPL043W_SA1 | rna-NM_001183857.1_SA1 | cds-NP_015282.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:447424-449481:+ | gene-YPL043W_ThermosaccDry | rna-NM_001183857.1_ThermosaccDry | cds-NP_015282.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:462314-464371:+ | gene-YPL043W_VR1 | rna-NM_001183857.1_VR1 | cds-NP_015282.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:446726-448783:+ | gene-YPL043W_ZTW1 | rna-NM_001183857.1_ZTW1 | cds-NP_015282.1_ZTW1 | 99.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:447325-449382:+ | gene-YPL043W_Sparadoxus | rna-NM_001183857.1_Sparadoxus | cds-NP_015282.1_Sparadoxus | 90.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |