Gene name: NOP16
Reference locus (S288C): YER002W
Gene biotype: protein_coding
Description: Nucleolar protein 16; Constituent of 66S pre-ribosomal particles; involved in 60S ribosomal subunit biogenesis; Belongs to the NOP16 family
Top 10 interactors (score): BRX1 (0.999); RPF1 (0.999); NOP15 (0.999); NSA1 (0.999); MAK16 (0.999); NSA2 (0.999); EBP2 (0.999); SSF1 (0.999); NOP4 (0.999); NOP2 (0.998); RRP15 (0.998); NIP7 (0.998); NOP7 (0.998); NUG1 (0.998); ERB1 (0.998); MRT4 (0.998); CIC1 (0.998); NOG1 (0.998); RLP7 (0.998); SPB1 (0.998)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:150494-151189:+ | gene-YER002W_AKU4011 | rna-NM_001178893.3_AKU4011 | cds-NP_010917.3_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:274490-275185:- | gene-YER002W_BG1 | rna-NM_001178893.3_BG1 | cds-NP_010917.3_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:158183-158878:+ | gene-YER002W_Bruggeman | rna-NM_001178893.3_Bruggeman | cds-NP_010917.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:153415-154110:+ | gene-YER002W_CAT1 | rna-NM_001178893.3_CAT1 | cds-NP_010917.3_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:150803-151498:+ | gene-YER002W_CBS1585 | rna-NM_001178893.3_CBS1585 | cds-NP_010917.3_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:152071-152766:+ | gene-YER002W_CBS436 | rna-NM_001178893.3_CBS436 | cds-NP_010917.3_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:150697-151392:+ | gene-YER002W_CBS6412 | rna-NM_001178893.3_CBS6412 | cds-NP_010917.3_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:155345-156040:+ | gene-YER002W_CBS6413 | rna-NM_001178893.3_CBS6413 | cds-NP_010917.3_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:154630-155325:+ | gene-YER002W_CENPK1137D | rna-NM_001178893.3_CENPK1137D | cds-NP_010917.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:151158-151853:+ | gene-YER002W_EthanolRed | rna-NM_001178893.3_EthanolRed | cds-NP_010917.3_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:151418-152113:+ | gene-YER002W_FaliES1 | rna-NM_001178893.3_FaliES1 | cds-NP_010917.3_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000024.1:18391-19086:+ | gene-YER002W_JAY291 | rna-NM_001178893.3_JAY291 | cds-NP_010917.3_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:154717-155412:+ | gene-YER002W_MUCL30387 | rna-NM_001178893.3_MUCL30387 | cds-NP_010917.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:151239-151934:+ | gene-YER002W_MUCL30388 | rna-NM_001178893.3_MUCL30388 | cds-NP_010917.3_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:149839-150534:+ | gene-YER002W_MUCL39482 | rna-NM_001178893.3_MUCL39482 | cds-NP_010917.3_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:155711-156406:+ | gene-YER002W_MUCL42920 | rna-NM_001178893.3_MUCL42920 | cds-NP_010917.3_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:156802-157497:+ | gene-YER002W_NCIM3186 | rna-NM_001178893.3_NCIM3186 | cds-NP_010917.3_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:154915-155610:+ | gene-YER002W_NCYC1407 | rna-NM_001178893.3_NCYC1407 | cds-NP_010917.3_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:159217-159912:+ | gene-YER002W_PE2H3 | rna-NM_001178893.3_PE2H3 | cds-NP_010917.3_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:155132-155827:+ | gene-YER002W_PE2H4 | rna-NM_001178893.3_PE2H4 | cds-NP_010917.3_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:156803-157498:+ | gene-YER002W_S288C | rna-NM_001178893.3_S288C | cds-NP_010917.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000020.1:86109-86801:- | gene-YER002W_SA1 | rna-NM_001178893.3_SA1 | cds-NP_010917.3_SA1 | 98.8 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:151824-152519:+ | gene-YER002W_ThermosaccDry | rna-NM_001178893.3_ThermosaccDry | cds-NP_010917.3_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:151308-152003:+ | gene-YER002W_VR1 | rna-NM_001178893.3_VR1 | cds-NP_010917.3_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:149854-150549:+ | gene-YER002W_ZTW1 | rna-NM_001178893.3_ZTW1 | cds-NP_010917.3_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:154568-155257:+ | gene-YER002W_Sparadoxus | rna-NM_001178893.3_Sparadoxus | cds-NP_010917.3_Sparadoxus | 88.9 | 99.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |