Gene name: NOP15
Reference locus (S288C): YNL110C
Gene biotype: protein_coding
Description: Ribosome biogenesis protein 15; Constituent of 66S pre-ribosomal particles; involved in 60S ribosomal subunit biogenesis; localizes to both nucleolus and cytoplasm
Top 10 interactors (score): RPF1 (0.999); RRS1 (0.999); NOP2 (0.999); DBP3 (0.999); RPF2 (0.999); YTM1 (0.999); SPB1 (0.999); MAK16 (0.999); NSA1 (0.999); RRP1 (0.999); RLP24 (0.999); DRS1 (0.999); NOP12 (0.999); IMP4 (0.999); NOG2 (0.999); NOP1 (0.999); NSA2 (0.999); BRX1 (0.999); NOC2 (0.999); HAS1 (0.999)
Homologues (species, bitscore): NIFK (Homo sapiens, 85.5); Nifk (Mus musculus, 83.6); nifk (Danio rerio, 88.6); nifk (Xenopus tropicalis, 84.3); CG6937 (Drosophila melanogaster, 85.9); T04A8.6 (Caenorhabditis elegans, 80.1); AT5G04600 (Arabidopsis thaliana, 104.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:411470-412132:- | gene-YNL110C_AKU4011 | rna-NM_001182948.1_AKU4011 | cds-NP_014289.1_AKU4011 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:315478-316140:- | gene-YNL110C_BG1 | rna-NM_001182948.1_BG1 | cds-NP_014289.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:422201-422863:- | gene-YNL110C_Bruggeman | rna-NM_001182948.1_Bruggeman | cds-NP_014289.1_Bruggeman | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:465242-465904:- | gene-YNL110C_CAT1 | rna-NM_001182948.1_CAT1 | cds-NP_014289.1_CAT1 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:412085-412747:- | gene-YNL110C_CBS1585 | rna-NM_001182948.1_CBS1585 | cds-NP_014289.1_CBS1585 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:480510-481172:- | gene-YNL110C_CBS436 | rna-NM_001182948.1_CBS436 | cds-NP_014289.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:407558-408220:- | gene-YNL110C_CBS6412 | rna-NM_001182948.1_CBS6412 | cds-NP_014289.1_CBS6412 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:408561-409223:- | gene-YNL110C_CBS6413 | rna-NM_001182948.1_CBS6413 | cds-NP_014289.1_CBS6413 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:411677-412339:- | gene-YNL110C_CENPK1137D | rna-NM_001182948.1_CENPK1137D | cds-NP_014289.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:408491-409153:- | gene-YNL110C_EthanolRed | rna-NM_001182948.1_EthanolRed | cds-NP_014289.1_EthanolRed | 98.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:404387-405049:- | gene-YNL110C_FaliES1 | rna-NM_001182948.1_FaliES1 | cds-NP_014289.1_FaliES1 | 98.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000021.1:60765-61427:- | gene-YNL110C_JAY291 | rna-NM_001182948.1_JAY291 | cds-NP_014289.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:418371-419033:- | gene-YNL110C_MUCL30387 | rna-NM_001182948.1_MUCL30387 | cds-NP_014289.1_MUCL30387 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:453514-454176:- | gene-YNL110C_MUCL30388 | rna-NM_001182948.1_MUCL30388 | cds-NP_014289.1_MUCL30388 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:409478-410140:- | gene-YNL110C_MUCL39482 | rna-NM_001182948.1_MUCL39482 | cds-NP_014289.1_MUCL39482 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:413511-414173:- | gene-YNL110C_MUCL42920 | rna-NM_001182948.1_MUCL42920 | cds-NP_014289.1_MUCL42920 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:417795-418457:- | gene-YNL110C_NCIM3186 | rna-NM_001182948.1_NCIM3186 | cds-NP_014289.1_NCIM3186 | 98.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:411615-412277:- | gene-YNL110C_NCYC1407 | rna-NM_001182948.1_NCYC1407 | cds-NP_014289.1_NCYC1407 | 98.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:410536-411198:- | gene-YNL110C_PE2H3 | rna-NM_001182948.1_PE2H3 | cds-NP_014289.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:409942-410604:- | gene-YNL110C_PE2H4 | rna-NM_001182948.1_PE2H4 | cds-NP_014289.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:417826-418488:- | gene-YNL110C_S288C | rna-NM_001182948.1_S288C | cds-NP_014289.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000024.1:2784-3446:- | gene-YNL110C_SA1 | rna-NM_001182948.1_SA1 | cds-NP_014289.1_SA1 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:405259-405921:- | gene-YNL110C_ThermosaccDry | rna-NM_001182948.1_ThermosaccDry | cds-NP_014289.1_ThermosaccDry | 98.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:423954-424616:- | gene-YNL110C_VR1 | rna-NM_001182948.1_VR1 | cds-NP_014289.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:315076-315738:- | gene-YNL110C_ZTW1 | rna-NM_001182948.1_ZTW1 | cds-NP_014289.1_ZTW1 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:416142-416804:- | gene-YNL110C_Sparadoxus | rna-NM_001182948.1_Sparadoxus | cds-NP_014289.1_Sparadoxus | 89.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |