Gene name: NOP13
Reference locus (S288C): YNL175C
Gene biotype: protein_coding
Description: Nucleolar protein found in preribosomal complexes; contains an RNA recognition motif (RRM); relative distribution to the nucleolus increases upon DNA replication stress
Top 10 interactors (score): NIP7 (0.993); NOP7 (0.992); NOP2 (0.992); NOP58 (0.991); DBP3 (0.99); EBP2 (0.99); SDA1 (0.989); NOP15 (0.988); ERB1 (0.987); NOP4 (0.986); PWP1 (0.984); ROK1 (0.984); MAK5 (0.983); DRS1 (0.982); HCA4 (0.981); DBP9 (0.98); UTP23 (0.977); RPF2 (0.974); RRP8 (0.971); BRX1 (0.971)
Homologues (species, bitscore): RBM23 (Homo sapiens, 77.4); Rbm39 (Mus musculus, 73.2); hnrpdl (Danio rerio, 73.6); rbm23 (Xenopus tropicalis, 80.1); Caper (Drosophila melanogaster, 63.2); cpf-2 (Caenorhabditis elegans, 63.2); AT5G09880 (Arabidopsis thaliana, 69.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:301127-302338:- | gene-YNL175C_AKU4011 | rna-NM_001183013.2_AKU4011 | cds-NP_014224.2_AKU4011 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:205095-206306:- | gene-YNL175C_BG1 | rna-NM_001183013.2_BG1 | cds-NP_014224.2_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:311188-312399:- | gene-YNL175C_Bruggeman | rna-NM_001183013.2_Bruggeman | cds-NP_014224.2_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:354063-355274:- | gene-YNL175C_CAT1 | rna-NM_001183013.2_CAT1 | cds-NP_014224.2_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:301779-302990:- | gene-YNL175C_CBS1585 | rna-NM_001183013.2_CBS1585 | cds-NP_014224.2_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:370102-371313:- | gene-YNL175C_CBS436 | rna-NM_001183013.2_CBS436 | cds-NP_014224.2_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:297184-298395:- | gene-YNL175C_CBS6412 | rna-NM_001183013.2_CBS6412 | cds-NP_014224.2_CBS6412 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:298212-299423:- | gene-YNL175C_CBS6413 | rna-NM_001183013.2_CBS6413 | cds-NP_014224.2_CBS6413 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:301217-302428:- | gene-YNL175C_CENPK1137D | rna-NM_001183013.2_CENPK1137D | cds-NP_014224.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:298100-299311:- | gene-YNL175C_EthanolRed | rna-NM_001183013.2_EthanolRed | cds-NP_014224.2_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:294013-295224:- | gene-YNL175C_FaliES1 | rna-NM_001183013.2_FaliES1 | cds-NP_014224.2_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000260.1:23272-24483:+ | gene-YNL175C_JAY291 | rna-NM_001183013.2_JAY291 | cds-NP_014224.2_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:307003-308214:- | gene-YNL175C_MUCL30387 | rna-NM_001183013.2_MUCL30387 | cds-NP_014224.2_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:341557-342768:- | gene-YNL175C_MUCL30388 | rna-NM_001183013.2_MUCL30388 | cds-NP_014224.2_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:299018-300229:- | gene-YNL175C_MUCL39482 | rna-NM_001183013.2_MUCL39482 | cds-NP_014224.2_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:301423-302634:- | gene-YNL175C_MUCL42920 | rna-NM_001183013.2_MUCL42920 | cds-NP_014224.2_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:307370-308581:- | gene-YNL175C_NCIM3186 | rna-NM_001183013.2_NCIM3186 | cds-NP_014224.2_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:301112-302323:- | gene-YNL175C_NCYC1407 | rna-NM_001183013.2_NCYC1407 | cds-NP_014224.2_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:298076-299287:- | gene-YNL175C_PE2H3 | rna-NM_001183013.2_PE2H3 | cds-NP_014224.2_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:297464-298675:- | gene-YNL175C_PE2H4 | rna-NM_001183013.2_PE2H4 | cds-NP_014224.2_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:307401-308612:- | gene-YNL175C_S288C | rna-NM_001183013.2_S288C | cds-NP_014224.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000018.1:104961-106172:+ | gene-YNL175C_SA1 | rna-NM_001183013.2_SA1 | cds-NP_014224.2_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:294870-296081:- | gene-YNL175C_ThermosaccDry | rna-NM_001183013.2_ThermosaccDry | cds-NP_014224.2_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:313396-314607:- | gene-YNL175C_VR1 | rna-NM_001183013.2_VR1 | cds-NP_014224.2_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:204695-205906:- | gene-YNL175C_ZTW1 | rna-NM_001183013.2_ZTW1 | cds-NP_014224.2_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:305469-306680:- | gene-YNL175C_Sparadoxus | rna-NM_001183013.2_Sparadoxus | cds-NP_014224.2_Sparadoxus | 91.2 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |