Gene name: NOP12
Reference locus (S288C): YOL041C
Gene biotype: protein_coding
Description: Nucleolar protein involved in pre-25S rRNA processing; also involved in biogenesis of large 60S ribosomal subunit; contains an RNA recognition motif (RRM); binds to Ebp2; similar to Nop13p and Nsr1p; Belongs to the RRM RBM34 family
Top 10 interactors (score): CIC1 (0.999); PUF6 (0.999); DBP3 (0.999); NOC2 (0.999); BRX1 (0.999); ERB1 (0.999); EBP2 (0.999); SSF1 (0.999); PWP1 (0.999); YTM1 (0.999); SPB1 (0.999); NOP15 (0.999); NOP2 (0.999); RPF2 (0.999); HAS1 (0.999); DRS1 (0.999); RLP24 (0.999); NOP4 (0.999); NOG1 (0.999); DBP10 (0.999)
Homologues (species, bitscore): RBM34 (Homo sapiens, 126.7); Rbm34 (Mus musculus, 124.0); rbm34 (Danio rerio, 134.8); rbm34 (Xenopus tropicalis, 124.0); CG12288 (Drosophila melanogaster, 79.7); F11A10.7 (Caenorhabditis elegans, 81.3); AT5G46840 (Arabidopsis thaliana, 98.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:235628-237007:- | gene-YOL041C_AKU4011 | rna-NM_001183295.1_AKU4011 | cds-NP_014601.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000152.1:51251-52630:- | gene-YOL041C_BG1 | rna-NM_001183295.1_BG1 | cds-NP_014601.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:238484-239863:- | gene-YOL041C_Bruggeman | rna-NM_001183295.1_Bruggeman | cds-NP_014601.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:236341-237720:- | gene-YOL041C_CAT1 | rna-NM_001183295.1_CAT1 | cds-NP_014601.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:230298-231677:- | gene-YOL041C_CBS1585 | rna-NM_001183295.1_CBS1585 | cds-NP_014601.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:234579-235958:- | gene-YOL041C_CBS436 | rna-NM_001183295.1_CBS436 | cds-NP_014601.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:229662-231041:- | gene-YOL041C_CBS6412 | rna-NM_001183295.1_CBS6412 | cds-NP_014601.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:237181-238560:- | gene-YOL041C_CBS6413 | rna-NM_001183295.1_CBS6413 | cds-NP_014601.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:250968-252347:- | gene-YOL041C_CENPK1137D | rna-NM_001183295.1_CENPK1137D | cds-NP_014601.1_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:232619-233998:- | gene-YOL041C_EthanolRed | rna-NM_001183295.1_EthanolRed | cds-NP_014601.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:235535-236914:- | gene-YOL041C_FaliES1 | rna-NM_001183295.1_FaliES1 | cds-NP_014601.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000018.1:29547-30926:+ | gene-YOL041C_JAY291 | rna-NM_001183295.1_JAY291 | cds-NP_014601.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:241506-242885:- | gene-YOL041C_MUCL30387 | rna-NM_001183295.1_MUCL30387 | cds-NP_014601.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:245857-247236:- | gene-YOL041C_MUCL30388 | rna-NM_001183295.1_MUCL30388 | cds-NP_014601.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:237783-239162:- | gene-YOL041C_MUCL39482 | rna-NM_001183295.1_MUCL39482 | cds-NP_014601.1_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:252718-254097:- | gene-YOL041C_MUCL42920 | rna-NM_001183295.1_MUCL42920 | cds-NP_014601.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:251156-252535:- | gene-YOL041C_NCIM3186 | rna-NM_001183295.1_NCIM3186 | cds-NP_014601.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:244527-245906:- | gene-YOL041C_NCYC1407 | rna-NM_001183295.1_NCYC1407 | cds-NP_014601.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:226945-228324:- | gene-YOL041C_PE2H3 | rna-NM_001183295.1_PE2H3 | cds-NP_014601.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:237919-239298:- | gene-YOL041C_PE2H4 | rna-NM_001183295.1_PE2H4 | cds-NP_014601.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:251267-252646:- | gene-YOL041C_S288C | rna-NM_001183295.1_S288C | cds-NP_014601.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:219267-220646:- | gene-YOL041C_SA1 | rna-NM_001183295.1_SA1 | cds-NP_014601.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:234106-235485:- | gene-YOL041C_ThermosaccDry | rna-NM_001183295.1_ThermosaccDry | cds-NP_014601.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:234170-235549:- | gene-YOL041C_VR1 | rna-NM_001183295.1_VR1 | cds-NP_014601.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000031.1:233973-235352:- | gene-YOL041C_ZTW1 | rna-NM_001183295.1_ZTW1 | cds-NP_014601.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:242348-243730:- | gene-YOL041C_Sparadoxus | rna-NM_001183295.1_Sparadoxus | cds-NP_014601.1_Sparadoxus | 89.6 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |