Gene name: NOP10
Reference locus (S288C): YHR072W-A
Gene biotype: protein_coding
Description: H/aca ribonucleoprotein complex subunit 3; Subunit of box H/ACA snoRNP complex; required for pseudouridylation and processing of pre-18S rRNA
Top 10 interactors (score): GAR1 (0.999); NHP2 (0.999); NOP56 (0.999); SNU13 (0.999); CBF5 (0.999); SHQ1 (0.998); EST2 (0.997); NOP58 (0.997); PUS4 (0.995); NOP1 (0.99); NAF1 (0.988); RPB10 (0.971); NIP7 (0.964); SMX2 (0.959); RPF2 (0.954); RPL42A (0.941); RPL42B (0.937); SMX3 (0.933); RPC10 (0.919); MRT4 (0.918)
Homologues (species, bitscore): NOP10 (Homo sapiens, 72.8); Nop10 (Mus musculus, 72.8); nop10 (Danio rerio, 80.5); nop10 (Xenopus tropicalis, 77.4); CG7637 (Drosophila melanogaster, 85.1); nola-3 (Caenorhabditis elegans, 71.6); NOP10 (Arabidopsis thaliana, 74.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:228078-228254:+ | gene-YHR072W-A_AKU4011 | rna-NM_001184438.1_AKU4011 | cds-NP_058135.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000053.1:148431-148607:+ | gene-YHR072W-A_BG1 | rna-NM_001184438.1_BG1 | cds-NP_058135.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:235911-236087:+ | gene-YHR072W-A_Bruggeman | rna-NM_001184438.1_Bruggeman | cds-NP_058135.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:230553-230729:+ | gene-YHR072W-A_CAT1 | rna-NM_001184438.1_CAT1 | cds-NP_058135.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:227118-227294:+ | gene-YHR072W-A_CBS1585 | rna-NM_001184438.1_CBS1585 | cds-NP_058135.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:224984-225160:+ | gene-YHR072W-A_CBS436 | rna-NM_001184438.1_CBS436 | cds-NP_058135.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:230464-230640:+ | gene-YHR072W-A_CBS6412 | rna-NM_001184438.1_CBS6412 | cds-NP_058135.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:228159-228335:+ | gene-YHR072W-A_CBS6413 | rna-NM_001184438.1_CBS6413 | cds-NP_058135.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:234834-235010:+ | gene-YHR072W-A_CENPK1137D | rna-NM_001184438.1_CENPK1137D | cds-NP_058135.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:287676-287852:+ | gene-YHR072W-A_EthanolRed | rna-NM_001184438.1_EthanolRed | cds-NP_058135.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:228480-228656:+ | gene-YHR072W-A_FaliES1 | rna-NM_001184438.1_FaliES1 | cds-NP_058135.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000394.1:11225-11401:+ | gene-YHR072W-A_JAY291 | rna-NM_001184438.1_JAY291 | cds-NP_058135.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:235421-235597:+ | gene-YHR072W-A_MUCL30387 | rna-NM_001184438.1_MUCL30387 | cds-NP_058135.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:235289-235465:+ | gene-YHR072W-A_MUCL30388 | rna-NM_001184438.1_MUCL30388 | cds-NP_058135.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:227443-227619:+ | gene-YHR072W-A_MUCL39482 | rna-NM_001184438.1_MUCL39482 | cds-NP_058135.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:234188-234364:+ | gene-YHR072W-A_MUCL42920 | rna-NM_001184438.1_MUCL42920 | cds-NP_058135.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:241546-241722:+ | gene-YHR072W-A_NCIM3186 | rna-NM_001184438.1_NCIM3186 | cds-NP_058135.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:229907-230083:+ | gene-YHR072W-A_NCYC1407 | rna-NM_001184438.1_NCYC1407 | cds-NP_058135.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:229589-229765:+ | gene-YHR072W-A_PE2H3 | rna-NM_001184438.1_PE2H3 | cds-NP_058135.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:237036-237212:+ | gene-YHR072W-A_PE2H4 | rna-NM_001184438.1_PE2H4 | cds-NP_058135.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:241664-241840:+ | gene-YHR072W-A_S288C | rna-NM_001184438.1_S288C | cds-NP_058135.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000014.1:117144-117320:- | gene-YHR072W-A_SA1 | rna-NM_001184438.1_SA1 | cds-NP_058135.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:229571-229747:+ | gene-YHR072W-A_ThermosaccDry | rna-NM_001184438.1_ThermosaccDry | cds-NP_058135.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:237215-237391:+ | gene-YHR072W-A_VR1 | rna-NM_001184438.1_VR1 | cds-NP_058135.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:221122-221298:+ | gene-YHR072W-A_ZTW1 | rna-NM_001184438.1_ZTW1 | cds-NP_058135.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:226933-227109:+ | gene-YHR072W-A_Sparadoxus | rna-NM_001184438.1_Sparadoxus | cds-NP_058135.1_Sparadoxus | 94.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |