Gene name: NOC4
Reference locus (S288C): YPR144C
Gene biotype: protein_coding
Description: Nucleolar protein; forms a complex with Nop14p that mediates maturation and nuclear export of 40S ribosomal subunits; relocalizes to the cytosol in response to hypoxia
Top 10 interactors (score): UTP5 (0.999); UTP18 (0.999); ENP1 (0.999); IMP4 (0.999); TSR1 (0.999); NOP1 (0.999); RRP12 (0.999); HAS1 (0.999); SAS10 (0.999); DBP8 (0.999); NOP58 (0.999); DIM1 (0.999); KRR1 (0.999); RRP7 (0.999); BUD21 (0.999); RCL1 (0.999); UTP11 (0.999); UTP6 (0.999); UTP4 (0.999); IMP3 (0.999)
Homologues (species, bitscore): NOC4L (Homo sapiens, 231.1); Noc4l (Mus musculus, 232.6); noc4l (Danio rerio, 242.3); noc4l (Xenopus tropicalis, 244.2); CG2875 (Drosophila melanogaster, 164.1); T20B12.3 (Caenorhabditis elegans, 128.3); EMB2762 (Arabidopsis thaliana, 176.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:785911-787569:- | gene-YPR144C_AKU4011 | rna-NM_001184241.1_AKU4011 | cds-NP_015470.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:109795-111453:+ | gene-YPR144C_BG1 | rna-NM_001184241.1_BG1 | cds-NP_015470.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:866210-867868:- | gene-YPR144C_Bruggeman | rna-NM_001184241.1_Bruggeman | cds-NP_015470.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:908480-910138:- | gene-YPR144C_CAT1 | rna-NM_001184241.1_CAT1 | cds-NP_015470.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:790167-791825:- | gene-YPR144C_CBS1585 | rna-NM_001184241.1_CBS1585 | cds-NP_015470.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:804260-805918:- | gene-YPR144C_CBS436 | rna-NM_001184241.1_CBS436 | cds-NP_015470.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:792896-794554:- | gene-YPR144C_CBS6412 | rna-NM_001184241.1_CBS6412 | cds-NP_015470.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:787618-789276:- | gene-YPR144C_CBS6413 | rna-NM_001184241.1_CBS6413 | cds-NP_015470.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:819763-821421:- | gene-YPR144C_CENPK1137D | rna-NM_001184241.1_CENPK1137D | cds-NP_015470.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:1108078-1109736:- | gene-YPR144C_EthanolRed | rna-NM_001184241.1_EthanolRed | cds-NP_015470.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:787625-789283:- | gene-YPR144C_FaliES1 | rna-NM_001184241.1_FaliES1 | cds-NP_015470.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000437.1:353-2011:- | gene-YPR144C_JAY291 | rna-NM_001184241.1_JAY291 | cds-NP_015470.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:806401-808059:- | gene-YPR144C_MUCL30387 | rna-NM_001184241.1_MUCL30387 | cds-NP_015470.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:806366-808024:- | gene-YPR144C_MUCL30388 | rna-NM_001184241.1_MUCL30388 | cds-NP_015470.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:782680-784338:- | gene-YPR144C_MUCL39482 | rna-NM_001184241.1_MUCL39482 | cds-NP_015470.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:846121-847779:- | gene-YPR144C_MUCL42920 | rna-NM_001184241.1_MUCL42920 | cds-NP_015470.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:819748-821406:- | gene-YPR144C_NCIM3186 | rna-NM_001184241.1_NCIM3186 | cds-NP_015470.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:791268-792926:- | gene-YPR144C_NCYC1407 | rna-NM_001184241.1_NCYC1407 | cds-NP_015470.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:797991-799649:- | gene-YPR144C_PE2H3 | rna-NM_001184241.1_PE2H3 | cds-NP_015470.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:797639-799297:- | gene-YPR144C_PE2H4 | rna-NM_001184241.1_PE2H4 | cds-NP_015470.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:819765-821423:- | gene-YPR144C_S288C | rna-NM_001184241.1_S288C | cds-NP_015470.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000028.1:112016-113674:- | gene-YPR144C_SA1 | rna-NM_001184241.1_SA1 | cds-NP_015470.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:787070-788728:- | gene-YPR144C_ThermosaccDry | rna-NM_001184241.1_ThermosaccDry | cds-NP_015470.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:809491-811149:- | gene-YPR144C_VR1 | rna-NM_001184241.1_VR1 | cds-NP_015470.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:790438-792096:- | gene-YPR144C_ZTW1 | rna-NM_001184241.1_ZTW1 | cds-NP_015470.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:792541-794199:- | gene-YPR144C_Sparadoxus | rna-NM_001184241.1_Sparadoxus | cds-NP_015470.1_Sparadoxus | 89.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |