Gene name: NNF2
Reference locus (S288C): YGR089W
Gene biotype: protein_coding
Description: Protein that exhibits physical and genetic interactions with Rpb8p; Rpb8p is a subunit of RNA polymerases I, II, and III; computational analysis of large-scale protein-protein interaction data suggests a role in chromosome segregation
Top 10 interactors (score): YEL043W (0.971); GMH1 (0.746); YDR455C (0.67); SYH1 (0.617); YLR177W (0.617); RPB8 (0.613); SYS1 (0.59); SFT2 (0.569); THP3 (0.568); MOG1 (0.499); TED1 (0.499); GDA1 (0.497); ORM1 (0.496); COG5 (0.491); COG6 (0.482); SMC4 (0.466); COG2 (0.465); AAT2 (0.45); ARO2 (0.45); SWA2 (0.446)
Homologues (species, bitscore): TPM4 (Homo sapiens, 52.0); Tpm1 (Mus musculus, 53.5); pleca (Danio rerio, 50.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:641141-643951:+ | gene-YGR089W_AKU4011 | rna-NM_001181218.1_AKU4011 | cds-NP_011603.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000173.1:76946-79756:+ | gene-YGR089W_BG1 | rna-NM_001181218.1_BG1 | cds-NP_011603.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:643082-645892:+ | gene-YGR089W_Bruggeman | rna-NM_001181218.1_Bruggeman | cds-NP_011603.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:641519-644329:+ | gene-YGR089W_CAT1 | rna-NM_001181218.1_CAT1 | cds-NP_011603.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:642105-644915:+ | gene-YGR089W_CBS1585 | rna-NM_001181218.1_CBS1585 | cds-NP_011603.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:643765-646575:+ | gene-YGR089W_CBS436 | rna-NM_001181218.1_CBS436 | cds-NP_011603.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:633798-636608:+ | gene-YGR089W_CBS6412 | rna-NM_001181218.1_CBS6412 | cds-NP_011603.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:638740-641550:+ | gene-YGR089W_CBS6413 | rna-NM_001181218.1_CBS6413 | cds-NP_011603.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:656638-659448:+ | gene-YGR089W_CENPK1137D | rna-NM_001181218.1_CENPK1137D | cds-NP_011603.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:628685-631495:+ | gene-YGR089W_EthanolRed | rna-NM_001181218.1_EthanolRed | cds-NP_011603.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:632532-635342:+ | gene-YGR089W_FaliES1 | rna-NM_001181218.1_FaliES1 | cds-NP_011603.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000396.1:41209-44019:- | gene-YGR089W_JAY291 | rna-NM_001181218.1_JAY291 | cds-NP_011603.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:639783-642593:+ | gene-YGR089W_MUCL30387 | rna-NM_001181218.1_MUCL30387 | cds-NP_011603.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:643129-645939:+ | gene-YGR089W_MUCL30388 | rna-NM_001181218.1_MUCL30388 | cds-NP_011603.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:637833-640643:+ | gene-YGR089W_MUCL39482 | rna-NM_001181218.1_MUCL39482 | cds-NP_011603.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:648143-650953:+ | gene-YGR089W_MUCL42920 | rna-NM_001181218.1_MUCL42920 | cds-NP_011603.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:656960-659770:+ | gene-YGR089W_NCIM3186 | rna-NM_001181218.1_NCIM3186 | cds-NP_011603.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:632522-635332:+ | gene-YGR089W_NCYC1407 | rna-NM_001181218.1_NCYC1407 | cds-NP_011603.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:635209-638019:+ | gene-YGR089W_PE2H3 | rna-NM_001181218.1_PE2H3 | cds-NP_011603.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:640329-643139:+ | gene-YGR089W_PE2H4 | rna-NM_001181218.1_PE2H4 | cds-NP_011603.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:656960-659770:+ | gene-YGR089W_S288C | rna-NM_001181218.1_S288C | cds-NP_011603.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000015.1:83533-86343:+ | gene-YGR089W_SA1 | rna-NM_001181218.1_SA1 | cds-NP_011603.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:652902-655712:+ | gene-YGR089W_ThermosaccDry | rna-NM_001181218.1_ThermosaccDry | cds-NP_011603.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:749399-752209:+ | gene-YGR089W_VR1 | rna-NM_001181218.1_VR1 | cds-NP_011603.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000015.1:107157-109967:+ | gene-YGR089W_ZTW1 | rna-NM_001181218.1_ZTW1 | cds-NP_011603.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:642402-645212:+ | gene-YGR089W_Sparadoxus | rna-NM_001181218.1_Sparadoxus | cds-NP_011603.1_Sparadoxus | 89.0 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |