Gene name: NMD5
Reference locus (S288C): YJR132W
Gene biotype: protein_coding
Description: Nonsense-mediated mRNA decay protein 5; Karyopherin; a carrier protein involved in nuclear import of proteins; importin beta homolog
Top 10 interactors (score): KAP95 (0.989); GSP1 (0.982); KAP123 (0.981); KAP114 (0.978); PSE1 (0.977); KAP120 (0.968); KAP104 (0.955); KAP122 (0.955); MTR10 (0.949); CRM1 (0.939); CRZ1 (0.932); MSN5 (0.925); RPA135 (0.917); RPA190 (0.912); DST1 (0.883); SRP1 (0.881); LOS1 (0.874); GSP2 (0.871); MTR4 (0.809); NUP159 (0.807)
Homologues (species, bitscore): IPO7 (Homo sapiens, 291.6); Ipo7 (Mus musculus, 294.3); ipo7 (Danio rerio, 305.4); ipo7 (Xenopus tropicalis, 278.1); msk (Drosophila melanogaster, 274.6); xpo-2 (Caenorhabditis elegans, 60.8); AT3G59020 (Arabidopsis thaliana, 227.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:641022-644168:+ | gene-YJR132W_AKU4011 | rna-NM_001181790.2_AKU4011 | cds-NP_012666.2_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000076.1:29433-32579:- | gene-YJR132W_BG1 | rna-NM_001181790.2_BG1 | cds-NP_012666.2_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:656751-659897:+ | gene-YJR132W_Bruggeman | rna-NM_001181790.2_Bruggeman | cds-NP_012666.2_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:661390-664536:+ | gene-YJR132W_CAT1 | rna-NM_001181790.2_CAT1 | cds-NP_012666.2_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:653066-656212:+ | gene-YJR132W_CBS1585 | rna-NM_001181790.2_CBS1585 | cds-NP_012666.2_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:671937-675083:+ | gene-YJR132W_CBS436 | rna-NM_001181790.2_CBS436 | cds-NP_012666.2_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:639843-642989:+ | gene-YJR132W_CBS6412 | rna-NM_001181790.2_CBS6412 | cds-NP_012666.2_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:642500-645646:+ | gene-YJR132W_CBS6413 | rna-NM_001181790.2_CBS6413 | cds-NP_012666.2_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:651882-655028:+ | gene-YJR132W_CENPK1137D | rna-NM_001181790.2_CENPK1137D | cds-NP_012666.2_CENPK1137D | 98.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:645442-648588:+ | gene-YJR132W_EthanolRed | rna-NM_001181790.2_EthanolRed | cds-NP_012666.2_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:656905-660051:+ | gene-YJR132W_FaliES1 | rna-NM_001181790.2_FaliES1 | cds-NP_012666.2_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000054.1:29107-32253:- | gene-YJR132W_JAY291 | rna-NM_001181790.2_JAY291 | cds-NP_012666.2_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:655783-658929:+ | gene-YJR132W_MUCL30387 | rna-NM_001181790.2_MUCL30387 | cds-NP_012666.2_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:653265-656411:+ | gene-YJR132W_MUCL30388 | rna-NM_001181790.2_MUCL30388 | cds-NP_012666.2_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:646551-649697:+ | gene-YJR132W_MUCL39482 | rna-NM_001181790.2_MUCL39482 | cds-NP_012666.2_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:651288-654434:+ | gene-YJR132W_MUCL42920 | rna-NM_001181790.2_MUCL42920 | cds-NP_012666.2_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:669501-672647:+ | gene-YJR132W_NCIM3186 | rna-NM_001181790.2_NCIM3186 | cds-NP_012666.2_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:644100-647246:+ | gene-YJR132W_NCYC1407 | rna-NM_001181790.2_NCYC1407 | cds-NP_012666.2_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:662289-665435:+ | gene-YJR132W_PE2H3 | rna-NM_001181790.2_PE2H3 | cds-NP_012666.2_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:655978-659124:+ | gene-YJR132W_PE2H4 | rna-NM_001181790.2_PE2H4 | cds-NP_012666.2_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:669522-672668:+ | gene-YJR132W_S288C | rna-NM_001181790.2_S288C | cds-NP_012666.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000069.1:29458-32604:- | gene-YJR132W_SA1 | rna-NM_001181790.2_SA1 | cds-NP_012666.2_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:650836-653982:+ | gene-YJR132W_ThermosaccDry | rna-NM_001181790.2_ThermosaccDry | cds-NP_012666.2_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:653209-656355:+ | gene-YJR132W_VR1 | rna-NM_001181790.2_VR1 | cds-NP_012666.2_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:630186-633332:+ | gene-YJR132W_ZTW1 | rna-NM_001181790.2_ZTW1 | cds-NP_012666.2_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:664433-667579:+ | gene-YJR132W_Sparadoxus | rna-NM_001181790.2_Sparadoxus | cds-NP_012666.2_Sparadoxus | 90.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |