Gene name: NMD4
Reference locus (S288C): YLR363C
Gene biotype: protein_coding
Description: Nonsense-mediated decay protein 4; Protein that may be involved in nonsense-mediated mRNA decay; interacts with Nam7p, relocalizes from nucleus to cytoplasmic foci upon DNA replication stress
Top 10 interactors (score): NAM7 (0.888); YLR363W-A (0.847); ESL2 (0.766); SWT1 (0.747); UPF3 (0.745); EBS1 (0.704); ESL1 (0.698); YKL023W (0.691); NMD2 (0.69); TMC1 (0.613); SKI3 (0.575); SKI8 (0.564); SKI7 (0.561); SKI2 (0.525); DCN1 (0.499); DIS3 (0.453); EDC2 (0.452); BMT5 (0.4)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:802043-802699:- | gene-YLR363C_AKU4011 | rna-NM_001182252.3_AKU4011 | cds-NP_013467.3_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:34183-34839:- | gene-YLR363C_BG1 | rna-NM_001182252.3_BG1 | cds-NP_013467.3_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:840355-841011:- | gene-YLR363C_Bruggeman | rna-NM_001182252.3_Bruggeman | cds-NP_013467.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:835859-836515:- | gene-YLR363C_CAT1 | rna-NM_001182252.3_CAT1 | cds-NP_013467.3_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:837036-837692:- | gene-YLR363C_CBS1585 | rna-NM_001182252.3_CBS1585 | cds-NP_013467.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:821264-821920:- | gene-YLR363C_CBS436 | rna-NM_001182252.3_CBS436 | cds-NP_013467.3_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:874042-874698:- | gene-YLR363C_CBS6412 | rna-NM_001182252.3_CBS6412 | cds-NP_013467.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:837926-838582:- | gene-YLR363C_CBS6413 | rna-NM_001182252.3_CBS6413 | cds-NP_013467.3_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:837230-837886:- | gene-YLR363C_CENPK1137D | rna-NM_001182252.3_CENPK1137D | cds-NP_013467.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:794602-795258:- | gene-YLR363C_EthanolRed | rna-NM_001182252.3_EthanolRed | cds-NP_013467.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:823407-824063:- | gene-YLR363C_FaliES1 | rna-NM_001182252.3_FaliES1 | cds-NP_013467.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000161.1:34000-34656:- | gene-YLR363C_JAY291 | rna-NM_001182252.3_JAY291 | cds-NP_013467.3_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:837770-838426:- | gene-YLR363C_MUCL30387 | rna-NM_001182252.3_MUCL30387 | cds-NP_013467.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:843388-844044:- | gene-YLR363C_MUCL30388 | rna-NM_001182252.3_MUCL30388 | cds-NP_013467.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:838255-838911:- | gene-YLR363C_MUCL39482 | rna-NM_001182252.3_MUCL39482 | cds-NP_013467.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:833529-834185:- | gene-YLR363C_MUCL42920 | rna-NM_001182252.3_MUCL42920 | cds-NP_013467.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:852469-853125:- | gene-YLR363C_NCIM3186 | rna-NM_001182252.3_NCIM3186 | cds-NP_013467.3_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:847475-848131:- | gene-YLR363C_NCYC1407 | rna-NM_001182252.3_NCYC1407 | cds-NP_013467.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:834421-835077:- | gene-YLR363C_PE2H3 | rna-NM_001182252.3_PE2H3 | cds-NP_013467.3_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:834165-834821:- | gene-YLR363C_PE2H4 | rna-NM_001182252.3_PE2H4 | cds-NP_013467.3_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:852495-853151:- | gene-YLR363C_S288C | rna-NM_001182252.3_S288C | cds-NP_013467.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:195539-196195:+ | gene-YLR363C_SA1 | rna-NM_001182252.3_SA1 | cds-NP_013467.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:826248-826904:- | gene-YLR363C_ThermosaccDry | rna-NM_001182252.3_ThermosaccDry | cds-NP_013467.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:839511-840167:- | gene-YLR363C_VR1 | rna-NM_001182252.3_VR1 | cds-NP_013467.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:163690-164346:- | gene-YLR363C_ZTW1 | rna-NM_001182252.3_ZTW1 | cds-NP_013467.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:812299-812955:- | gene-YLR363C_Sparadoxus | rna-NM_001182252.3_Sparadoxus | cds-NP_013467.3_Sparadoxus | 90.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |