Gene name: NMD3
Reference locus (S288C): YHR170W
Gene biotype: protein_coding
Description: Protein involved in nuclear export of the large ribosomal subunit; acts as a Crm1p-dependent adapter protein for export of nascent ribosomal subunits through the nuclear pore complex; Belongs to the NMD3 family
Top 10 interactors (score): SPB1 (0.999); YTM1 (0.999); RLP24 (0.999); DBP8 (0.999); HAS1 (0.999); REI1 (0.999); NSA2 (0.999); NOG2 (0.999); LSG1 (0.999); NOP15 (0.999); NOP2 (0.999); RPF1 (0.999); NUG1 (0.999); ARX1 (0.999); ERB1 (0.999); MRT4 (0.999); YVH1 (0.999); RPL10 (0.999); RPF2 (0.999); RRS1 (0.999)
Homologues (species, bitscore): NMD3 (Homo sapiens, 464.2); Nmd3 (Mus musculus, 462.6); nmd3 (Danio rerio, 462.6); nmd3 (Xenopus tropicalis, 477.2); Nmd3 (Drosophila melanogaster, 458.8); T25G3.3 (Caenorhabditis elegans, 411.0); NMD3 (Arabidopsis thaliana, 401.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:430924-432480:+ | gene-YHR170W_AKU4011 | rna-NM_001179301.1_AKU4011 | cds-NP_012040.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000141.1:85261-86817:- | gene-YHR170W_BG1 | rna-NM_001179301.1_BG1 | cds-NP_012040.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:438166-439722:+ | gene-YHR170W_Bruggeman | rna-NM_001179301.1_Bruggeman | cds-NP_012040.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:433567-435123:+ | gene-YHR170W_CAT1 | rna-NM_001179301.1_CAT1 | cds-NP_012040.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:430380-431936:+ | gene-YHR170W_CBS1585 | rna-NM_001179301.1_CBS1585 | cds-NP_012040.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:427820-429376:+ | gene-YHR170W_CBS436 | rna-NM_001179301.1_CBS436 | cds-NP_012040.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:430836-432392:+ | gene-YHR170W_CBS6412 | rna-NM_001179301.1_CBS6412 | cds-NP_012040.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:431263-432819:+ | gene-YHR170W_CBS6413 | rna-NM_001179301.1_CBS6413 | cds-NP_012040.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:436999-438555:+ | gene-YHR170W_CENPK1137D | rna-NM_001179301.1_CENPK1137D | cds-NP_012040.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:489474-491030:+ | gene-YHR170W_EthanolRed | rna-NM_001179301.1_EthanolRed | cds-NP_012040.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:431917-433473:+ | gene-YHR170W_FaliES1 | rna-NM_001179301.1_FaliES1 | cds-NP_012040.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000017.1:6372-7928:- | gene-YHR170W_JAY291 | rna-NM_001179301.1_JAY291 | cds-NP_012040.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:439239-440795:+ | gene-YHR170W_MUCL30387 | rna-NM_001179301.1_MUCL30387 | cds-NP_012040.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:438678-440234:+ | gene-YHR170W_MUCL30388 | rna-NM_001179301.1_MUCL30388 | cds-NP_012040.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:430291-431847:+ | gene-YHR170W_MUCL39482 | rna-NM_001179301.1_MUCL39482 | cds-NP_012040.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:436896-438452:+ | gene-YHR170W_MUCL42920 | rna-NM_001179301.1_MUCL42920 | cds-NP_012040.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:443710-445266:+ | gene-YHR170W_NCIM3186 | rna-NM_001179301.1_NCIM3186 | cds-NP_012040.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:432750-434306:+ | gene-YHR170W_NCYC1407 | rna-NM_001179301.1_NCYC1407 | cds-NP_012040.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:431889-433445:+ | gene-YHR170W_PE2H3 | rna-NM_001179301.1_PE2H3 | cds-NP_012040.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:439316-440872:+ | gene-YHR170W_PE2H4 | rna-NM_001179301.1_PE2H4 | cds-NP_012040.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:443828-445384:+ | gene-YHR170W_S288C | rna-NM_001179301.1_S288C | cds-NP_012040.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000070.1:6432-7988:- | gene-YHR170W_SA1 | rna-NM_001179301.1_SA1 | cds-NP_012040.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:433000-434556:+ | gene-YHR170W_ThermosaccDry | rna-NM_001179301.1_ThermosaccDry | cds-NP_012040.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:440815-442371:+ | gene-YHR170W_VR1 | rna-NM_001179301.1_VR1 | cds-NP_012040.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:423240-424796:+ | gene-YHR170W_ZTW1 | rna-NM_001179301.1_ZTW1 | cds-NP_012040.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:429354-430910:+ | gene-YHR170W_Sparadoxus | rna-NM_001179301.1_Sparadoxus | cds-NP_012040.1_Sparadoxus | 92.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |