Gene name: NMD2
Reference locus (S288C): YHR077C
Gene biotype: protein_coding
Description: Protein involved in the nonsense-mediated mRNA decay (NMD) pathway; interacts with Nam7p and Upf3p; involved in telomere maintenance
Top 10 interactors (score): UPF3 (0.999); NAM7 (0.999); SUP35 (0.996); XRN1 (0.983); STO1 (0.959); FAL1 (0.959); SUP45 (0.951); SKI7 (0.922); ECM32 (0.917); SPT6 (0.896); TOR1 (0.894); DCP2 (0.893); CWC22 (0.889); TOR2 (0.886); PAB1 (0.885); CBC2 (0.885); EST1 (0.88); CDC33 (0.878); EBS1 (0.876); RRP6 (0.871)
Homologues (species, bitscore): UPF2 (Homo sapiens, 240.7); Upf2 (Mus musculus, 235.3); upf2 (Danio rerio, 201.4); UPF2 (Xenopus tropicalis, 242.3); Upf2 (Drosophila melanogaster, 173.7); smg-3 (Caenorhabditis elegans, 133.7); AT2G39260 (Arabidopsis thaliana, 262.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:238794-242170:- | gene-YHR077C_AKU4011 | rna-NM_001179207.1_AKU4011 | cds-NP_011944.2_AKU4011 | 99.3 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000053.1:159141-162517:- | gene-YHR077C_BG1 | rna-NM_001179207.1_BG1 | cds-NP_011944.2_BG1 | 99.5 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:246621-249997:- | gene-YHR077C_Bruggeman | rna-NM_001179207.1_Bruggeman | cds-NP_011944.2_Bruggeman | 99.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:241515-245140:- | gene-YHR077C_CAT1 | rna-NM_001179207.1_CAT1 | cds-NP_011944.2_CAT1 | 92.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:237835-241211:- | gene-YHR077C_CBS1585 | rna-NM_001179207.1_CBS1585 | cds-NP_011944.2_CBS1585 | 99.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:235694-239070:- | gene-YHR077C_CBS436 | rna-NM_001179207.1_CBS436 | cds-NP_011944.2_CBS436 | 99.6 | 99.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:241180-244557:- | gene-YHR077C_CBS6412 | rna-NM_001179207.1_CBS6412 | cds-NP_011944.2_CBS6412 | 99.3 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:238875-242251:- | gene-YHR077C_CBS6413 | rna-NM_001179207.1_CBS6413 | cds-NP_011944.2_CBS6413 | 99.1 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:245544-248926:- | gene-YHR077C_CENPK1137D | rna-NM_001179207.1_CENPK1137D | cds-NP_011944.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:298392-301777:- | gene-YHR077C_EthanolRed | rna-NM_001179207.1_EthanolRed | cds-NP_011944.2_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:239196-242581:- | gene-YHR077C_FaliES1 | rna-NM_001179207.1_FaliES1 | cds-NP_011944.2_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000394.1:21936-25306:- | gene-YHR077C_JAY291 | rna-NM_001179207.1_JAY291 | cds-NP_011944.2_JAY291 | 98.8 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:246133-249515:- | gene-YHR077C_MUCL30387 | rna-NM_001179207.1_MUCL30387 | cds-NP_011944.2_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:245999-249381:- | gene-YHR077C_MUCL30388 | rna-NM_001179207.1_MUCL30388 | cds-NP_011944.2_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:238159-241535:- | gene-YHR077C_MUCL39482 | rna-NM_001179207.1_MUCL39482 | cds-NP_011944.2_MUCL39482 | 99.3 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:244898-248280:- | gene-YHR077C_MUCL42920 | rna-NM_001179207.1_MUCL42920 | cds-NP_011944.2_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:252256-255638:- | gene-YHR077C_NCIM3186 | rna-NM_001179207.1_NCIM3186 | cds-NP_011944.2_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:240623-243999:- | gene-YHR077C_NCYC1407 | rna-NM_001179207.1_NCYC1407 | cds-NP_011944.2_NCYC1407 | 99.3 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:240300-243670:- | gene-YHR077C_PE2H3 | rna-NM_001179207.1_PE2H3 | cds-NP_011944.2_PE2H3 | 98.8 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:247747-251117:- | gene-YHR077C_PE2H4 | rna-NM_001179207.1_PE2H4 | cds-NP_011944.2_PE2H4 | 98.8 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:252374-255756:- | gene-YHR077C_S288C | rna-NM_001179207.1_S288C | cds-NP_011944.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000014.1:103233-106609:+ | gene-YHR077C_SA1 | rna-NM_001179207.1_SA1 | cds-NP_011944.2_SA1 | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:240287-243672:- | gene-YHR077C_ThermosaccDry | rna-NM_001179207.1_ThermosaccDry | cds-NP_011944.2_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:248175-251545:- | gene-YHR077C_VR1 | rna-NM_001179207.1_VR1 | cds-NP_011944.2_VR1 | 98.9 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:231838-235222:- | gene-YHR077C_ZTW1 | rna-NM_001179207.1_ZTW1 | cds-NP_011944.2_ZTW1 | 99.3 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:237584-240916:- | gene-YHR077C_Sparadoxus | rna-NM_001179207.1_Sparadoxus | cds-NP_011944.2_Sparadoxus | 86.8 | 98.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |