Gene name: NIP7
Reference locus (S288C): YPL211W
Gene biotype: protein_coding
Description: Nucleolar protein required for 60S ribosome subunit biogenesis; constituent of 66S pre-ribosomal particles; physically interacts with Nop8p and the exosome subunit Rrp43p
Top 10 interactors (score): NOP56 (0.999); NOP1 (0.999); NOG2 (0.999); NSA2 (0.999); HAS1 (0.999); NOP15 (0.999); RPF2 (0.999); NOP2 (0.999); RPF1 (0.999); RRS1 (0.999); YTM1 (0.999); SPB1 (0.999); MRT4 (0.999); NOC3 (0.999); NOP7 (0.999); ARX1 (0.999); ERB1 (0.999); NUG1 (0.999); EBP2 (0.999); NHP2 (0.999)
Homologues (species, bitscore): NIP7 (Homo sapiens, 225.7); Nip7 (Mus musculus, 224.2); nip7 (Danio rerio, 225.7); nip7 (Xenopus tropicalis, 233.8); CG7006 (Drosophila melanogaster, 196.1); C43E11.9 (Caenorhabditis elegans, 215.7); AT4G15770 (Arabidopsis thaliana, 207.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:131367-131912:+ | gene-YPL211W_AKU4011 | rna-NM_001184025.1_AKU4011 | cds-NP_015113.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:337137-337682:+ | gene-YPL211W_BG1 | rna-NM_001184025.1_BG1 | cds-NP_015113.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:156831-157376:+ | gene-YPL211W_Bruggeman | rna-NM_001184025.1_Bruggeman | cds-NP_015113.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:153439-153984:+ | gene-YPL211W_CAT1 | rna-NM_001184025.1_CAT1 | cds-NP_015113.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:135552-136097:+ | gene-YPL211W_CBS1585 | rna-NM_001184025.1_CBS1585 | cds-NP_015113.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:149975-150520:+ | gene-YPL211W_CBS436 | rna-NM_001184025.1_CBS436 | cds-NP_015113.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:140356-140901:+ | gene-YPL211W_CBS6412 | rna-NM_001184025.1_CBS6412 | cds-NP_015113.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:131730-132275:+ | gene-YPL211W_CBS6413 | rna-NM_001184025.1_CBS6413 | cds-NP_015113.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:153432-153977:+ | gene-YPL211W_CENPK1137D | rna-NM_001184025.1_CENPK1137D | cds-NP_015113.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:130483-131028:+ | gene-YPL211W_EthanolRed | rna-NM_001184025.1_EthanolRed | cds-NP_015113.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:137689-138234:+ | gene-YPL211W_FaliES1 | rna-NM_001184025.1_FaliES1 | cds-NP_015113.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000069.1:20090-20635:- | gene-YPL211W_JAY291 | rna-NM_001184025.1_JAY291 | cds-NP_015113.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:148540-149085:+ | gene-YPL211W_MUCL30387 | rna-NM_001184025.1_MUCL30387 | cds-NP_015113.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:146731-147276:+ | gene-YPL211W_MUCL30388 | rna-NM_001184025.1_MUCL30388 | cds-NP_015113.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:128682-129227:+ | gene-YPL211W_MUCL39482 | rna-NM_001184025.1_MUCL39482 | cds-NP_015113.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:147565-148110:+ | gene-YPL211W_MUCL42920 | rna-NM_001184025.1_MUCL42920 | cds-NP_015113.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:153478-154023:+ | gene-YPL211W_NCIM3186 | rna-NM_001184025.1_NCIM3186 | cds-NP_015113.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:135131-135676:+ | gene-YPL211W_NCYC1407 | rna-NM_001184025.1_NCYC1407 | cds-NP_015113.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:142839-143384:+ | gene-YPL211W_PE2H3 | rna-NM_001184025.1_PE2H3 | cds-NP_015113.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:142482-143027:+ | gene-YPL211W_PE2H4 | rna-NM_001184025.1_PE2H4 | cds-NP_015113.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:153495-154040:+ | gene-YPL211W_S288C | rna-NM_001184025.1_S288C | cds-NP_015113.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000095.1:20142-20687:- | gene-YPL211W_SA1 | rna-NM_001184025.1_SA1 | cds-NP_015113.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:137470-138015:+ | gene-YPL211W_ThermosaccDry | rna-NM_001184025.1_ThermosaccDry | cds-NP_015113.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:151518-152063:+ | gene-YPL211W_VR1 | rna-NM_001184025.1_VR1 | cds-NP_015113.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:136990-137535:+ | gene-YPL211W_ZTW1 | rna-NM_001184025.1_ZTW1 | cds-NP_015113.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:138550-139095:+ | gene-YPL211W_Sparadoxus | rna-NM_001184025.1_Sparadoxus | cds-NP_015113.1_Sparadoxus | 94.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |