Gene name: NIP100
Reference locus (S288C): YPL174C
Gene biotype: protein_coding
Description: Protein NIP100; Large subunit of the dynactin complex; dynactin is involved in partitioning the mitotic spindle between mother and daughter cells; putative ortholog of mammalian p150(glued)
Top 10 interactors (score): JNM1 (0.999); ARP1 (0.998); LDB18 (0.997); BIM1 (0.996); DYN1 (0.995); PAC11 (0.99); ARP10 (0.986); PAC1 (0.984); KIP3 (0.918); BIK1 (0.907); CIN8 (0.892); TUB3 (0.871); DYN3 (0.866); NDL1 (0.863); NUM1 (0.863); KIP2 (0.838); KAR9 (0.838); DYN2 (0.824); YKE2 (0.823); BNI1 (0.806)
Homologues (species, bitscore): CLIP1 (Homo sapiens, 78.6); Clip1 (Mus musculus, 78.2); clip1a (Danio rerio, 77.8); clip1 (Xenopus tropicalis, 78.2); CLIP-190 (Drosophila melanogaster, 70.1); dnc-1 (Caenorhabditis elegans, 65.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:197839-200445:- | gene-YPL174C_AKU4011 | rna-NM_001183988.1_AKU4011 | cds-NP_015151.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:403500-406106:- | gene-YPL174C_BG1 | rna-NM_001183988.1_BG1 | cds-NP_015151.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:223683-226325:- | gene-YPL174C_Bruggeman | rna-NM_001183988.1_Bruggeman | cds-NP_015151.1_Bruggeman | 98.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:220494-223100:- | gene-YPL174C_CAT1 | rna-NM_001183988.1_CAT1 | cds-NP_015151.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:201901-204507:- | gene-YPL174C_CBS1585 | rna-NM_001183988.1_CBS1585 | cds-NP_015151.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:216557-219163:- | gene-YPL174C_CBS436 | rna-NM_001183988.1_CBS436 | cds-NP_015151.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:206577-209183:- | gene-YPL174C_CBS6412 | rna-NM_001183988.1_CBS6412 | cds-NP_015151.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:198540-201146:- | gene-YPL174C_CBS6413 | rna-NM_001183988.1_CBS6413 | cds-NP_015151.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:220051-222657:- | gene-YPL174C_CENPK1137D | rna-NM_001183988.1_CENPK1137D | cds-NP_015151.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:196579-199185:- | gene-YPL174C_EthanolRed | rna-NM_001183988.1_EthanolRed | cds-NP_015151.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:204171-206777:- | gene-YPL174C_FaliES1 | rna-NM_001183988.1_FaliES1 | cds-NP_015151.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000007.1:159131-161737:+ | gene-YPL174C_JAY291 | rna-NM_001183988.1_JAY291 | cds-NP_015151.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:215066-217672:- | gene-YPL174C_MUCL30387 | rna-NM_001183988.1_MUCL30387 | cds-NP_015151.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:213087-215693:- | gene-YPL174C_MUCL30388 | rna-NM_001183988.1_MUCL30388 | cds-NP_015151.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:195230-197836:- | gene-YPL174C_MUCL39482 | rna-NM_001183988.1_MUCL39482 | cds-NP_015151.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:251918-254560:- | gene-YPL174C_MUCL42920 | rna-NM_001183988.1_MUCL42920 | cds-NP_015151.1_MUCL42920 | 97.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:220150-222756:- | gene-YPL174C_NCIM3186 | rna-NM_001183988.1_NCIM3186 | cds-NP_015151.1_NCIM3186 | 92.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:201686-204292:- | gene-YPL174C_NCYC1407 | rna-NM_001183988.1_NCYC1407 | cds-NP_015151.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:209119-211725:- | gene-YPL174C_PE2H3 | rna-NM_001183988.1_PE2H3 | cds-NP_015151.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:208762-211368:- | gene-YPL174C_PE2H4 | rna-NM_001183988.1_PE2H4 | cds-NP_015151.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:220167-222773:- | gene-YPL174C_S288C | rna-NM_001183988.1_S288C | cds-NP_015151.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000012.1:150907-153513:+ | gene-YPL174C_SA1 | rna-NM_001183988.1_SA1 | cds-NP_015151.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:203969-206575:- | gene-YPL174C_ThermosaccDry | rna-NM_001183988.1_ThermosaccDry | cds-NP_015151.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:218892-221498:- | gene-YPL174C_VR1 | rna-NM_001183988.1_VR1 | cds-NP_015151.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:203298-205904:- | gene-YPL174C_ZTW1 | rna-NM_001183988.1_ZTW1 | cds-NP_015151.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:204869-207478:- | gene-YPL174C_Sparadoxus | rna-NM_001183988.1_Sparadoxus | cds-NP_015151.1_Sparadoxus | 84.2 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |