Gene name: NIP1
Reference locus (S288C): YMR309C
Gene biotype: protein_coding
Description: eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3); involved in the assembly of preinitiation complex and start codon selection; eIF3 is also involved in programmed stop codon readthrough
Top 10 interactors (score): RPG1 (0.999); GCD11 (0.999); TIF5 (0.999); RLI1 (0.999); SUI2 (0.999); TIF4631 (0.999); FUN12 (0.999); TIF34 (0.999); PRT1 (0.999); HCR1 (0.999); SUI3 (0.999); TIF35 (0.999); SUI1 (0.999); TIF11 (0.998); RPS20 (0.996); RPS3 (0.995); RPS8B (0.995); RPS0A (0.995); ASC1 (0.995); RPS5 (0.992)
Homologues (species, bitscore): EIF3C (Homo sapiens, 264.6); Eif3c (Mus musculus, 254.2); eif3c (Danio rerio, 259.6); eif3c (Xenopus tropicalis, 264.6); eIF3-S8 (Drosophila melanogaster, 231.1); eif-3.C (Caenorhabditis elegans, 247.7); EIF3C (Arabidopsis thaliana, 313.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:932548-934986:- | gene-YMR309C_AKU4011 | rna-NM_001182820.1_AKU4011 | cds-NP_014040.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:19225-21663:+ | gene-YMR309C_BG1 | rna-NM_001182820.1_BG1 | cds-NP_014040.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:877958-880396:- | gene-YMR309C_Bruggeman | rna-NM_001182820.1_Bruggeman | cds-NP_014040.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:880522-882960:- | gene-YMR309C_CAT1 | rna-NM_001182820.1_CAT1 | cds-NP_014040.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:864801-867239:- | gene-YMR309C_CBS1585 | rna-NM_001182820.1_CBS1585 | cds-NP_014040.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:887090-889528:- | gene-YMR309C_CBS436 | rna-NM_001182820.1_CBS436 | cds-NP_014040.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:975521-977959:- | gene-YMR309C_CBS6412 | rna-NM_001182820.1_CBS6412 | cds-NP_014040.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:863921-866359:- | gene-YMR309C_CBS6413 | rna-NM_001182820.1_CBS6413 | cds-NP_014040.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:887549-889987:- | gene-YMR309C_CENPK1137D | rna-NM_001182820.1_CENPK1137D | cds-NP_014040.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:924545-926983:- | gene-YMR309C_EthanolRed | rna-NM_001182820.1_EthanolRed | cds-NP_014040.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:870786-873224:- | gene-YMR309C_FaliES1 | rna-NM_001182820.1_FaliES1 | cds-NP_014040.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000096.1:21775-24213:+ | gene-YMR309C_JAY291 | rna-NM_001182820.1_JAY291 | cds-NP_014040.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:871070-873508:- | gene-YMR309C_MUCL30387 | rna-NM_001182820.1_MUCL30387 | cds-NP_014040.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:880561-882999:- | gene-YMR309C_MUCL30388 | rna-NM_001182820.1_MUCL30388 | cds-NP_014040.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:865862-868300:- | gene-YMR309C_MUCL39482 | rna-NM_001182820.1_MUCL39482 | cds-NP_014040.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:874173-876611:- | gene-YMR309C_MUCL42920 | rna-NM_001182820.1_MUCL42920 | cds-NP_014040.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:892942-895380:- | gene-YMR309C_NCIM3186 | rna-NM_001182820.1_NCIM3186 | cds-NP_014040.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:865521-867959:- | gene-YMR309C_NCYC1407 | rna-NM_001182820.1_NCYC1407 | cds-NP_014040.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:880825-883263:- | gene-YMR309C_PE2H3 | rna-NM_001182820.1_PE2H3 | cds-NP_014040.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:876807-879245:- | gene-YMR309C_PE2H4 | rna-NM_001182820.1_PE2H4 | cds-NP_014040.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:892988-895426:- | gene-YMR309C_S288C | rna-NM_001182820.1_S288C | cds-NP_014040.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000036.1:70784-73222:- | gene-YMR309C_SA1 | rna-NM_001182820.1_SA1 | cds-NP_014040.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:866941-869379:- | gene-YMR309C_ThermosaccDry | rna-NM_001182820.1_ThermosaccDry | cds-NP_014040.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:880677-883115:- | gene-YMR309C_VR1 | rna-NM_001182820.1_VR1 | cds-NP_014040.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:282163-284601:- | gene-YMR309C_ZTW1 | rna-NM_001182820.1_ZTW1 | cds-NP_014040.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:885605-888043:- | gene-YMR309C_Sparadoxus | rna-NM_001182820.1_Sparadoxus | cds-NP_014040.1_Sparadoxus | 93.4 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |