Gene name: NIF3
Reference locus (S288C): YGL221C
Gene biotype: protein_coding
Description: NGG1-interacting factor 3; Protein of unknown function; similar to Listeria monocytogenes major sigma factor (rpoD gene product); the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; Belongs to the GTP cyclohydrolase I type 2/NIF3 family
Top 10 interactors (score): YLR118C (0.758); YMR087W (0.747); PXP2 (0.733); VPS28 (0.714); SUA5 (0.667); MEU1 (0.663); VAS1 (0.663); CCS1 (0.646); PUS4 (0.629); BNA3 (0.616); PHO92 (0.614); DIA4 (0.612); SAN1 (0.591); HBN1 (0.572); TRM5 (0.572); HTS1 (0.571); TUM1 (0.567); COG6 (0.563); MOD5 (0.531); TES1 (0.53)
Homologues (species, bitscore): NIF3L1 (Homo sapiens, 135.6); Nif3l1 (Mus musculus, 129.4); nif3l1 (Danio rerio, 140.6); nif3l1 (Xenopus tropicalis, 136.7); CG4278 (Drosophila melanogaster, 157.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:82768-83634:- | gene-YGL221C_AKU4011 | rna-NM_001181086.1_AKU4011 | cds-NP_011294.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000175.1:75831-76697:- | gene-YGL221C_BG1 | rna-NM_001181086.1_BG1 | cds-NP_011294.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:83278-84144:- | gene-YGL221C_Bruggeman | rna-NM_001181086.1_Bruggeman | cds-NP_011294.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:81941-82807:- | gene-YGL221C_CAT1 | rna-NM_001181086.1_CAT1 | cds-NP_011294.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:87073-87939:- | gene-YGL221C_CBS1585 | rna-NM_001181086.1_CBS1585 | cds-NP_011294.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:82635-83501:- | gene-YGL221C_CBS436 | rna-NM_001181086.1_CBS436 | cds-NP_011294.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:74204-75070:- | gene-YGL221C_CBS6412 | rna-NM_001181086.1_CBS6412 | cds-NP_011294.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:80908-81774:- | gene-YGL221C_CBS6413 | rna-NM_001181086.1_CBS6413 | cds-NP_011294.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:81460-82326:- | gene-YGL221C_CENPK1137D | rna-NM_001181086.1_CENPK1137D | cds-NP_011294.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:73570-74436:- | gene-YGL221C_EthanolRed | rna-NM_001181086.1_EthanolRed | cds-NP_011294.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:74413-75279:- | gene-YGL221C_FaliES1 | rna-NM_001181086.1_FaliES1 | cds-NP_011294.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000397.1:817-1683:- | gene-YGL221C_JAY291 | rna-NM_001181086.1_JAY291 | cds-NP_011294.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:83194-84060:- | gene-YGL221C_MUCL30387 | rna-NM_001181086.1_MUCL30387 | cds-NP_011294.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:85373-86239:- | gene-YGL221C_MUCL30388 | rna-NM_001181086.1_MUCL30388 | cds-NP_011294.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:83586-84452:- | gene-YGL221C_MUCL39482 | rna-NM_001181086.1_MUCL39482 | cds-NP_011294.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:86692-87558:- | gene-YGL221C_MUCL42920 | rna-NM_001181086.1_MUCL42920 | cds-NP_011294.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:81426-82292:- | gene-YGL221C_NCIM3186 | rna-NM_001181086.1_NCIM3186 | cds-NP_011294.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:75305-76171:- | gene-YGL221C_NCYC1407 | rna-NM_001181086.1_NCYC1407 | cds-NP_011294.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:78134-79000:- | gene-YGL221C_PE2H3 | rna-NM_001181086.1_PE2H3 | cds-NP_011294.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:77682-78548:- | gene-YGL221C_PE2H4 | rna-NM_001181086.1_PE2H4 | cds-NP_011294.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:81426-82292:- | gene-YGL221C_S288C | rna-NM_001181086.1_S288C | cds-NP_011294.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:292995-293861:+ | gene-YGL221C_SA1 | rna-NM_001181086.1_SA1 | cds-NP_011294.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:74674-75540:- | gene-YGL221C_ThermosaccDry | rna-NM_001181086.1_ThermosaccDry | cds-NP_011294.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:82547-83413:- | gene-YGL221C_VR1 | rna-NM_001181086.1_VR1 | cds-NP_011294.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:73723-74589:- | gene-YGL221C_ZTW1 | rna-NM_001181086.1_ZTW1 | cds-NP_011294.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:80775-81641:- | gene-YGL221C_Sparadoxus | rna-NM_001181086.1_Sparadoxus | cds-NP_011294.1_Sparadoxus | 88.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |