Gene name: NIC96
Reference locus (S288C): YFR002W
Gene biotype: protein_coding
Description: Linker nucleoporin component of the nuclear pore complex (NPC); also part of the NPC nuclear basket; contributes to nucleocytoplasmic transport and NPC biogenesis; forms stable associations with three FG-nucleoporins (Nsp1p, Nup57p, and Nup49p)
Top 10 interactors (score): NUP170 (0.999); NUP84 (0.999); NUP57 (0.999); NUP192 (0.999); NUP49 (0.999); NSP1 (0.999); NUP2 (0.998); NUP188 (0.998); NUP157 (0.998); SEH1 (0.996); NUP85 (0.996); NUP145 (0.996); POM152 (0.995); NUP53 (0.995); NUP116 (0.992); NUP133 (0.992); MEX67 (0.99); SEC13 (0.989); NUP1 (0.989); MLP2 (0.988)
Homologues (species, bitscore): NUP93 (Homo sapiens, 216.9); Nup93 (Mus musculus, 214.2); nup93 (Danio rerio, 208.4); nup93 (Xenopus tropicalis, 165.6); Nup93-1 (Drosophila melanogaster, 121.3); npp-13 (Caenorhabditis elegans, 94.4); AT2G41620 (Arabidopsis thaliana, 64.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005300.1:140462-142981:+ | gene-YFR002W_AKU4011 | rna-NM_001179967.1_AKU4011 | cds-NP_116657.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000079.1:25357-27876:+ | gene-YFR002W_BG1 | rna-NM_001179967.1_BG1 | cds-NP_116657.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005508.1:140028-142547:+ | gene-YFR002W_Bruggeman | rna-NM_001179967.1_Bruggeman | cds-NP_116657.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005524.1:145193-147712:+ | gene-YFR002W_CAT1 | rna-NM_001179967.1_CAT1 | cds-NP_116657.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005364.1:141287-143806:+ | gene-YFR002W_CBS1585 | rna-NM_001179967.1_CBS1585 | cds-NP_116657.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005348.1:115134-117653:+ | gene-YFR002W_CBS436 | rna-NM_001179967.1_CBS436 | cds-NP_116657.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005332.1:141028-143547:+ | gene-YFR002W_CBS6412 | rna-NM_001179967.1_CBS6412 | cds-NP_116657.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005316.1:143538-146057:+ | gene-YFR002W_CBS6413 | rna-NM_001179967.1_CBS6413 | cds-NP_116657.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001527.1:146151-148670:+ | gene-YFR002W_CENPK1137D | rna-NM_001179967.1_CENPK1137D | cds-NP_116657.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005476.1:139448-141967:+ | gene-YFR002W_EthanolRed | rna-NM_001179967.1_EthanolRed | cds-NP_116657.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005540.1:141095-143614:+ | gene-YFR002W_FaliES1 | rna-NM_001179967.1_FaliES1 | cds-NP_116657.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000451.1:5202-7721:+ | gene-YFR002W_JAY291 | rna-NM_001179967.1_JAY291 | cds-NP_116657.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005412.1:141659-144178:+ | gene-YFR002W_MUCL30387 | rna-NM_001179967.1_MUCL30387 | cds-NP_116657.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005444.1:139635-142154:+ | gene-YFR002W_MUCL30388 | rna-NM_001179967.1_MUCL30388 | cds-NP_116657.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005284.1:139731-142250:+ | gene-YFR002W_MUCL39482 | rna-NM_001179967.1_MUCL39482 | cds-NP_116657.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005428.1:138994-141513:+ | gene-YFR002W_MUCL42920 | rna-NM_001179967.1_MUCL42920 | cds-NP_116657.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011815.1:150015-152534:+ | gene-YFR002W_NCIM3186 | rna-NM_001179967.1_NCIM3186 | cds-NP_116657.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005268.1:140746-143265:+ | gene-YFR002W_NCYC1407 | rna-NM_001179967.1_NCYC1407 | cds-NP_116657.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994145.1:159812-162331:+ | gene-YFR002W_PE2H3 | rna-NM_001179967.1_PE2H3 | cds-NP_116657.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999877.1:159360-161879:+ | gene-YFR002W_PE2H4 | rna-NM_001179967.1_PE2H4 | cds-NP_116657.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001138.5:150016-152535:+ | gene-YFR002W_S288C | rna-NM_001179967.1_S288C | cds-NP_116657.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000011.1:171691-174210:- | gene-YFR002W_SA1 | rna-NM_001179967.1_SA1 | cds-NP_116657.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005492.1:140255-142774:+ | gene-YFR002W_ThermosaccDry | rna-NM_001179967.1_ThermosaccDry | cds-NP_116657.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005460.1:155459-157978:+ | gene-YFR002W_VR1 | rna-NM_001179967.1_VR1 | cds-NP_116657.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000013.1:70705-73224:+ | gene-YFR002W_ZTW1 | rna-NM_001179967.1_ZTW1 | cds-NP_116657.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047492.1:163903-166422:+ | gene-YFR002W_Sparadoxus | rna-NM_001179967.1_Sparadoxus | cds-NP_116657.1_Sparadoxus | 91.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |