Gene name: NHP2
Reference locus (S288C): YDL208W
Gene biotype: protein_coding
Description: H/ACA ribonucleoprotein complex subunit 2; Protein related to mammalian high mobility group (HMG) proteins; nuclear protein; essential for function of H/ACA-type snoRNPs, which are involved in 18S rRNA processing; Belongs to the eukaryotic ribosomal protein eL8 family
Top 10 interactors (score): NAF1 (0.999); NOP10 (0.999); CBF5 (0.999); SHQ1 (0.999); MRT4 (0.999); NOP56 (0.999); ERB1 (0.999); EBP2 (0.999); NIP7 (0.999); GAR1 (0.999); NOP1 (0.999); NOP58 (0.999); SNU13 (0.999); PUS4 (0.998); RRP15 (0.998); YTM1 (0.998); IMP3 (0.997); NOP15 (0.997); EMG1 (0.996); KRR1 (0.995)
Homologues (species, bitscore): NHP2 (Homo sapiens, 141.4); Nhp2 (Mus musculus, 141.7); nhp2 (Danio rerio, 140.6); nhp2 (Xenopus tropicalis, 146.7); NHP2 (Drosophila melanogaster, 113.6); Y48A6B.3 (Caenorhabditis elegans, 119.8); AT5G08180 (Arabidopsis thaliana, 137.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:70997-71467:+ | gene-YDL208W_AKU4011 | rna-NM_001180268.1_AKU4011 | cds-NP_010073.2_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000101.1:4171-4641:+ | gene-YDL208W_BG1 | rna-NM_001180268.1_BG1 | cds-NP_010073.2_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:87387-87857:+ | gene-YDL208W_Bruggeman | rna-NM_001180268.1_Bruggeman | cds-NP_010073.2_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:89499-89969:+ | gene-YDL208W_CAT1 | rna-NM_001180268.1_CAT1 | cds-NP_010073.2_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:69849-70319:+ | gene-YDL208W_CBS1585 | rna-NM_001180268.1_CBS1585 | cds-NP_010073.2_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:284752-285222:+ | gene-YDL208W_CBS436 | rna-NM_001180268.1_CBS436 | cds-NP_010073.2_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:69961-70431:+ | gene-YDL208W_CBS6412 | rna-NM_001180268.1_CBS6412 | cds-NP_010073.2_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:87507-87977:+ | gene-YDL208W_CBS6413 | rna-NM_001180268.1_CBS6413 | cds-NP_010073.2_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:86178-86648:+ | gene-YDL208W_CENPK1137D | rna-NM_001180268.1_CENPK1137D | cds-NP_010073.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:83645-84115:+ | gene-YDL208W_EthanolRed | rna-NM_001180268.1_EthanolRed | cds-NP_010073.2_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:88250-88720:+ | gene-YDL208W_FaliES1 | rna-NM_001180268.1_FaliES1 | cds-NP_010073.2_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000344.1:30532-31002:- | gene-YDL208W_JAY291 | rna-NM_001180268.1_JAY291 | cds-NP_010073.2_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:85620-86090:+ | gene-YDL208W_MUCL30387 | rna-NM_001180268.1_MUCL30387 | cds-NP_010073.2_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:75191-75661:+ | gene-YDL208W_MUCL30388 | rna-NM_001180268.1_MUCL30388 | cds-NP_010073.2_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:70692-71162:+ | gene-YDL208W_MUCL39482 | rna-NM_001180268.1_MUCL39482 | cds-NP_010073.2_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:86771-87241:+ | gene-YDL208W_MUCL42920 | rna-NM_001180268.1_MUCL42920 | cds-NP_010073.2_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:87435-87905:+ | gene-YDL208W_NCIM3186 | rna-NM_001180268.1_NCIM3186 | cds-NP_010073.2_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:70648-71118:+ | gene-YDL208W_NCYC1407 | rna-NM_001180268.1_NCYC1407 | cds-NP_010073.2_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:78391-78861:+ | gene-YDL208W_PE2H3 | rna-NM_001180268.1_PE2H3 | cds-NP_010073.2_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:78401-78871:+ | gene-YDL208W_PE2H4 | rna-NM_001180268.1_PE2H4 | cds-NP_010073.2_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:87512-87982:+ | gene-YDL208W_S288C | rna-NM_001180268.1_S288C | cds-NP_010073.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000126.1:4081-4551:+ | gene-YDL208W_SA1 | rna-NM_001180268.1_SA1 | cds-NP_010073.2_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:88014-88484:+ | gene-YDL208W_ThermosaccDry | rna-NM_001180268.1_ThermosaccDry | cds-NP_010073.2_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:88966-89436:+ | gene-YDL208W_VR1 | rna-NM_001180268.1_VR1 | cds-NP_010073.2_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:86693-87163:+ | gene-YDL208W_ZTW1 | rna-NM_001180268.1_ZTW1 | cds-NP_010073.2_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:90031-90501:+ | gene-YDL208W_Sparadoxus | rna-NM_001180268.1_Sparadoxus | cds-NP_010073.2_Sparadoxus | 91.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |