Gene name: NHP10
Reference locus (S288C): YDL002C
Gene biotype: protein_coding
Description: Non-histone protein 10; Non-essential INO80 chromatin remodeling complex subunit; preferentially binds DNA ends, protecting them from exonucleatic cleavage; deletion affects telomere maintenance via recombination; related to mammalian high mobility group proteins
Top 10 interactors (score): IES1 (0.999); IES3 (0.998); IES5 (0.998); IES4 (0.996); ARP4 (0.996); RVB1 (0.996); INO80 (0.995); ACT1 (0.995); RVB2 (0.995); ARP8 (0.994); ARP5 (0.989); TAF14 (0.984); IES6 (0.983); YAF9 (0.971); SWR1 (0.968); VPS71 (0.968); VPS72 (0.967); BDF1 (0.952); ARP6 (0.943); SWC7 (0.935)
Homologues (species, bitscore): HMGB3 (Homo sapiens, 55.5); Hmgb2 (Mus musculus, 54.7); hmgb3b (Danio rerio, 58.2); hmgb3 (Xenopus tropicalis, 53.9); hmg-3 (Caenorhabditis elegans, 58.2); HMG (Arabidopsis thaliana, 53.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:432217-432828:- | gene-YDL002C_AKU4011 | rna-NM_001180061.3_AKU4011 | cds-NP_010282.3_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:116548-117159:+ | gene-YDL002C_BG1 | rna-NM_001180061.3_BG1 | cds-NP_010282.3_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:452820-453431:- | gene-YDL002C_Bruggeman | rna-NM_001180061.3_Bruggeman | cds-NP_010282.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:445665-446276:- | gene-YDL002C_CAT1 | rna-NM_001180061.3_CAT1 | cds-NP_010282.3_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:429428-430039:- | gene-YDL002C_CBS1585 | rna-NM_001180061.3_CBS1585 | cds-NP_010282.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:446195-446806:- | gene-YDL002C_CBS436 | rna-NM_001180061.3_CBS436 | cds-NP_010282.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:426676-427287:- | gene-YDL002C_CBS6412 | rna-NM_001180061.3_CBS6412 | cds-NP_010282.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:448366-448977:- | gene-YDL002C_CBS6413 | rna-NM_001180061.3_CBS6413 | cds-NP_010282.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:445830-446441:- | gene-YDL002C_CENPK1137D | rna-NM_001180061.3_CENPK1137D | cds-NP_010282.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:441049-441660:- | gene-YDL002C_EthanolRed | rna-NM_001180061.3_EthanolRed | cds-NP_010282.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:447220-447831:- | gene-YDL002C_FaliES1 | rna-NM_001180061.3_FaliES1 | cds-NP_010282.3_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000442.1:24230-24841:+ | gene-YDL002C_JAY291 | rna-NM_001180061.3_JAY291 | cds-NP_010282.3_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:446691-447302:- | gene-YDL002C_MUCL30387 | rna-NM_001180061.3_MUCL30387 | cds-NP_010282.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:437153-437764:- | gene-YDL002C_MUCL30388 | rna-NM_001180061.3_MUCL30388 | cds-NP_010282.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:430797-431408:- | gene-YDL002C_MUCL39482 | rna-NM_001180061.3_MUCL39482 | cds-NP_010282.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:352226-352837:- | gene-YDL002C_MUCL42920 | rna-NM_001180061.3_MUCL42920 | cds-NP_010282.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:446890-447501:- | gene-YDL002C_NCIM3186 | rna-NM_001180061.3_NCIM3186 | cds-NP_010282.3_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:429719-430330:- | gene-YDL002C_NCYC1407 | rna-NM_001180061.3_NCYC1407 | cds-NP_010282.3_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:445322-445933:- | gene-YDL002C_PE2H3 | rna-NM_001180061.3_PE2H3 | cds-NP_010282.3_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:444635-445246:- | gene-YDL002C_PE2H4 | rna-NM_001180061.3_PE2H4 | cds-NP_010282.3_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:446967-447578:- | gene-YDL002C_S288C | rna-NM_001180061.3_S288C | cds-NP_010282.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000099.1:24419-25030:+ | gene-YDL002C_SA1 | rna-NM_001180061.3_SA1 | cds-NP_010282.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:446699-447310:- | gene-YDL002C_ThermosaccDry | rna-NM_001180061.3_ThermosaccDry | cds-NP_010282.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:451133-451744:- | gene-YDL002C_VR1 | rna-NM_001180061.3_VR1 | cds-NP_010282.3_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:444595-445206:- | gene-YDL002C_ZTW1 | rna-NM_001180061.3_ZTW1 | cds-NP_010282.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:448962-449573:- | gene-YDL002C_Sparadoxus | rna-NM_001180061.3_Sparadoxus | cds-NP_010282.3_Sparadoxus | 90.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |