Gene name: NGR1
Reference locus (S288C): YBR212W
Gene biotype: protein_coding
Description: RNA binding protein that negatively regulates growth rate; interacts with the 3' UTR of the mitochondrial porin (POR1) mRNA and enhances its degradation; overexpression impairs mitochondrial function; interacts with Dhh1p to mediate POR1 mRNA decay; expressed in stationary phase
Top 10 interactors (score): RPG1 (0.823); CDC33 (0.79); TIF4632 (0.774); DHH1 (0.761); PBP1 (0.755); RIE1 (0.749); EDC3 (0.731); PRP39 (0.702); WHI3 (0.7); TIF4631 (0.689); NRP1 (0.679); KNS1 (0.671); SCD6 (0.654); HEK2 (0.652); MPT5 (0.647); XRN1 (0.631); MRN1 (0.619); EST2 (0.616); TIF2 (0.602); SES1 (0.601)
Homologues (species, bitscore): TIAL1 (Homo sapiens, 107.1); Tial1 (Mus musculus, 105.1); tial1 (Danio rerio, 112.5); tial1 (Xenopus tropicalis, 102.8); CG15440 (Drosophila melanogaster, 90.5); tiar-1 (Caenorhabditis elegans, 95.5); RBP47A (Arabidopsis thaliana, 172.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:632173-634188:+ | gene-YBR212W_AKU4011 | rna-NM_001178560.3_AKU4011 | cds-NP_009771.3_AKU4011 | 99.5 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000066.1:3110-5131:+ | gene-YBR212W_BG1 | rna-NM_001178560.3_BG1 | cds-NP_009771.3_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:633356-635368:+ | gene-YBR212W_Bruggeman | rna-NM_001178560.3_Bruggeman | cds-NP_009771.3_Bruggeman | 99.3 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:636560-638572:+ | gene-YBR212W_CAT1 | rna-NM_001178560.3_CAT1 | cds-NP_009771.3_CAT1 | 99.3 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:623705-625720:+ | gene-YBR212W_CBS1585 | rna-NM_001178560.3_CBS1585 | cds-NP_009771.3_CBS1585 | 99.5 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:630159-632171:+ | gene-YBR212W_CBS436 | rna-NM_001178560.3_CBS436 | cds-NP_009771.3_CBS436 | 99.4 | 99.7 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:718682-720697:+ | gene-YBR212W_CBS6412 | rna-NM_001178560.3_CBS6412 | cds-NP_009771.3_CBS6412 | 99.5 | 99.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:629744-631759:+ | gene-YBR212W_CBS6413 | rna-NM_001178560.3_CBS6413 | cds-NP_009771.3_CBS6413 | 99.5 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:641642-643654:+ | gene-YBR212W_CENPK1137D | rna-NM_001178560.3_CENPK1137D | cds-NP_009771.3_CENPK1137D | 99.2 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:755429-757444:+ | gene-YBR212W_EthanolRed | rna-NM_001178560.3_EthanolRed | cds-NP_009771.3_EthanolRed | 99.5 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:648536-650551:+ | gene-YBR212W_FaliES1 | rna-NM_001178560.3_FaliES1 | cds-NP_009771.3_FaliES1 | 99.5 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000326.1:2914-4935:+ | gene-YBR212W_JAY291 | rna-NM_001178560.3_JAY291 | cds-NP_009771.3_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:635369-637381:+ | gene-YBR212W_MUCL30387 | rna-NM_001178560.3_MUCL30387 | cds-NP_009771.3_MUCL30387 | 99.3 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:652447-654459:+ | gene-YBR212W_MUCL30388 | rna-NM_001178560.3_MUCL30388 | cds-NP_009771.3_MUCL30388 | 99.3 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:622057-624072:+ | gene-YBR212W_MUCL39482 | rna-NM_001178560.3_MUCL39482 | cds-NP_009771.3_MUCL39482 | 99.5 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:631562-633577:+ | gene-YBR212W_MUCL42920 | rna-NM_001178560.3_MUCL42920 | cds-NP_009771.3_MUCL42920 | 99.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:647683-649701:+ | gene-YBR212W_NCIM3186 | rna-NM_001178560.3_NCIM3186 | cds-NP_009771.3_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:623919-625934:+ | gene-YBR212W_NCYC1407 | rna-NM_001178560.3_NCYC1407 | cds-NP_009771.3_NCYC1407 | 99.5 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:647052-649073:+ | gene-YBR212W_PE2H3 | rna-NM_001178560.3_PE2H3 | cds-NP_009771.3_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:644728-646749:+ | gene-YBR212W_PE2H4 | rna-NM_001178560.3_PE2H4 | cds-NP_009771.3_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:647886-649904:+ | gene-YBR212W_S288C | rna-NM_001178560.3_S288C | cds-NP_009771.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000019.1:3007-5028:+ | gene-YBR212W_SA1 | rna-NM_001178560.3_SA1 | cds-NP_009771.3_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:647546-649561:+ | gene-YBR212W_ThermosaccDry | rna-NM_001178560.3_ThermosaccDry | cds-NP_009771.3_ThermosaccDry | 99.5 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:627732-629744:+ | gene-YBR212W_VR1 | rna-NM_001178560.3_VR1 | cds-NP_009771.3_VR1 | 99.4 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:620412-622427:+ | gene-YBR212W_ZTW1 | rna-NM_001178560.3_ZTW1 | cds-NP_009771.3_ZTW1 | 99.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:664353-666392:+ | gene-YBR212W_Sparadoxus | rna-NM_001178560.3_Sparadoxus | cds-NP_009771.3_Sparadoxus | 87.3 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |