Gene name: NGL2
Reference locus (S288C): YMR285C
Gene biotype: protein_coding
Description: RNA exonuclease NGL2; Protein involved in 5.8S rRNA processing; Ccr4p-like RNase required for correct 3'-end formation of 5.8S rRNA at site E; similar to Ngl1p; NGL2 has a paralog, NGL3, that arose from the whole genome duplication
Top 10 interactors (score): REX3 (0.926); REX2 (0.922); NGL1 (0.815); RNH70 (0.807); POP2 (0.783); RRP6 (0.739); MPP6 (0.693); CDC39 (0.633); RAT1 (0.616); MTR4 (0.607); GRC3 (0.577); NOP19 (0.572); CDC36 (0.558); NOB1 (0.543); XRN1 (0.52); RNT1 (0.504); RRP45 (0.49); CAF40 (0.47); RRP40 (0.47); CDC73 (0.459)
Homologues (species, bitscore): ANGEL1 (Homo sapiens, 79.3); Angel1 (Mus musculus, 79.3); LOC569547 (Danio rerio, 89.4); cnot6l (Xenopus tropicalis, 81.6); twin (Drosophila melanogaster, 76.6); ccr-4 (Caenorhabditis elegans, 71.6); AT1G31500 (Arabidopsis thaliana, 89.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:879196-880743:- | gene-YMR285C_AKU4011 | rna-NM_001182792.1_AKU4011 | cds-NP_014012.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:72930-74477:+ | gene-YMR285C_BG1 | rna-NM_001182792.1_BG1 | cds-NP_014012.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:824405-825952:- | gene-YMR285C_Bruggeman | rna-NM_001182792.1_Bruggeman | cds-NP_014012.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:827691-829238:- | gene-YMR285C_CAT1 | rna-NM_001182792.1_CAT1 | cds-NP_014012.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:811446-812993:- | gene-YMR285C_CBS1585 | rna-NM_001182792.1_CBS1585 | cds-NP_014012.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:833761-835308:- | gene-YMR285C_CBS436 | rna-NM_001182792.1_CBS436 | cds-NP_014012.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:923020-924567:- | gene-YMR285C_CBS6412 | rna-NM_001182792.1_CBS6412 | cds-NP_014012.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:810567-812114:- | gene-YMR285C_CBS6413 | rna-NM_001182792.1_CBS6413 | cds-NP_014012.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:834690-836237:- | gene-YMR285C_CENPK1137D | rna-NM_001182792.1_CENPK1137D | cds-NP_014012.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:871886-873433:- | gene-YMR285C_EthanolRed | rna-NM_001182792.1_EthanolRed | cds-NP_014012.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:817913-819460:- | gene-YMR285C_FaliES1 | rna-NM_001182792.1_FaliES1 | cds-NP_014012.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000262.1:32273-33820:+ | gene-YMR285C_JAY291 | rna-NM_001182792.1_JAY291 | cds-NP_014012.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:818230-819777:- | gene-YMR285C_MUCL30387 | rna-NM_001182792.1_MUCL30387 | cds-NP_014012.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:827627-829174:- | gene-YMR285C_MUCL30388 | rna-NM_001182792.1_MUCL30388 | cds-NP_014012.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:812534-814081:- | gene-YMR285C_MUCL39482 | rna-NM_001182792.1_MUCL39482 | cds-NP_014012.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:821338-822885:- | gene-YMR285C_MUCL42920 | rna-NM_001182792.1_MUCL42920 | cds-NP_014012.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:840098-841645:- | gene-YMR285C_NCIM3186 | rna-NM_001182792.1_NCIM3186 | cds-NP_014012.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:812177-813724:- | gene-YMR285C_NCYC1407 | rna-NM_001182792.1_NCYC1407 | cds-NP_014012.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:827982-829529:- | gene-YMR285C_PE2H3 | rna-NM_001182792.1_PE2H3 | cds-NP_014012.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:823956-825503:- | gene-YMR285C_PE2H4 | rna-NM_001182792.1_PE2H4 | cds-NP_014012.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:840144-841691:- | gene-YMR285C_S288C | rna-NM_001182792.1_S288C | cds-NP_014012.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000036.1:17912-19459:- | gene-YMR285C_SA1 | rna-NM_001182792.1_SA1 | cds-NP_014012.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:814082-815629:- | gene-YMR285C_ThermosaccDry | rna-NM_001182792.1_ThermosaccDry | cds-NP_014012.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:827827-829374:- | gene-YMR285C_VR1 | rna-NM_001182792.1_VR1 | cds-NP_014012.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:229316-230863:- | gene-YMR285C_ZTW1 | rna-NM_001182792.1_ZTW1 | cds-NP_014012.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:832690-834237:- | gene-YMR285C_Sparadoxus | rna-NM_001182792.1_Sparadoxus | cds-NP_014012.1_Sparadoxus | 89.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |