Gene name: NGL1
Reference locus (S288C): YOL042W
Gene biotype: protein_coding
Description: RNA exonuclease NGL1; Putative endonuclease; has a domain similar to a magnesium-dependent endonuclease motif in mRNA deadenylase Ccr4p; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies
Top 10 interactors (score): CDC39 (0.986); POP2 (0.983); NGL3 (0.934); CAF40 (0.882); RNH70 (0.835); NOT5 (0.828); NOT3 (0.828); NGL2 (0.815); PUF3 (0.804); PAN2 (0.799); RPM2 (0.794); CDC36 (0.78); PAN3 (0.771); HSH155 (0.763); MRPL3 (0.748); MRPL40 (0.747); PHO92 (0.727); REX2 (0.725); NOP7 (0.722); MRPL35 (0.717)
Homologues (species, bitscore): CNOT6L (Homo sapiens, 95.5); Cnot6l (Mus musculus, 98.6); zgc:171797 (Danio rerio, 102.4); cnot6l (Xenopus tropicalis, 95.9); twin (Drosophila melanogaster, 116.7); ccr-4 (Caenorhabditis elegans, 103.6); AT1G31500 (Arabidopsis thaliana, 83.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:234186-235277:+ | gene-YOL042W_AKU4011 | rna-NM_001183296.1_AKU4011 | cds-NP_014600.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000152.1:49809-50900:+ | gene-YOL042W_BG1 | rna-NM_001183296.1_BG1 | cds-NP_014600.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:237042-238133:+ | gene-YOL042W_Bruggeman | rna-NM_001183296.1_Bruggeman | cds-NP_014600.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:234899-235990:+ | gene-YOL042W_CAT1 | rna-NM_001183296.1_CAT1 | cds-NP_014600.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:228856-229947:+ | gene-YOL042W_CBS1585 | rna-NM_001183296.1_CBS1585 | cds-NP_014600.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:233136-234227:+ | gene-YOL042W_CBS436 | rna-NM_001183296.1_CBS436 | cds-NP_014600.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:228220-229311:+ | gene-YOL042W_CBS6412 | rna-NM_001183296.1_CBS6412 | cds-NP_014600.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:235739-236830:+ | gene-YOL042W_CBS6413 | rna-NM_001183296.1_CBS6413 | cds-NP_014600.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:249526-250617:+ | gene-YOL042W_CENPK1137D | rna-NM_001183296.1_CENPK1137D | cds-NP_014600.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:231177-232268:+ | gene-YOL042W_EthanolRed | rna-NM_001183296.1_EthanolRed | cds-NP_014600.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:234093-235184:+ | gene-YOL042W_FaliES1 | rna-NM_001183296.1_FaliES1 | cds-NP_014600.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000018.1:31277-32368:- | gene-YOL042W_JAY291 | rna-NM_001183296.1_JAY291 | cds-NP_014600.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:240064-241155:+ | gene-YOL042W_MUCL30387 | rna-NM_001183296.1_MUCL30387 | cds-NP_014600.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:244415-245506:+ | gene-YOL042W_MUCL30388 | rna-NM_001183296.1_MUCL30388 | cds-NP_014600.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:236341-237432:+ | gene-YOL042W_MUCL39482 | rna-NM_001183296.1_MUCL39482 | cds-NP_014600.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:251276-252367:+ | gene-YOL042W_MUCL42920 | rna-NM_001183296.1_MUCL42920 | cds-NP_014600.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:249714-250805:+ | gene-YOL042W_NCIM3186 | rna-NM_001183296.1_NCIM3186 | cds-NP_014600.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:243085-244176:+ | gene-YOL042W_NCYC1407 | rna-NM_001183296.1_NCYC1407 | cds-NP_014600.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:225503-226594:+ | gene-YOL042W_PE2H3 | rna-NM_001183296.1_PE2H3 | cds-NP_014600.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:236477-237568:+ | gene-YOL042W_PE2H4 | rna-NM_001183296.1_PE2H4 | cds-NP_014600.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:249825-250916:+ | gene-YOL042W_S288C | rna-NM_001183296.1_S288C | cds-NP_014600.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:217825-218916:+ | gene-YOL042W_SA1 | rna-NM_001183296.1_SA1 | cds-NP_014600.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:232664-233755:+ | gene-YOL042W_ThermosaccDry | rna-NM_001183296.1_ThermosaccDry | cds-NP_014600.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:232728-233819:+ | gene-YOL042W_VR1 | rna-NM_001183296.1_VR1 | cds-NP_014600.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000031.1:232531-233622:+ | gene-YOL042W_ZTW1 | rna-NM_001183296.1_ZTW1 | cds-NP_014600.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:240919-242010:+ | gene-YOL042W_Sparadoxus | rna-NM_001183296.1_Sparadoxus | cds-NP_014600.1_Sparadoxus | 91.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |