Gene name: NEW1
Reference locus (S288C): YPL226W
Gene biotype: protein_coding
Description: [NU+] prion formation protein 1; ATP binding cassette protein; cosediments with polysomes and is required for biogenesis of the small ribosomal subunit; Asn/Gln-rich rich region supports [NU+] prion formation and susceptibility to [PSI+] prion induction; Belongs to the ABC transporter superfamily. ABCF family. EF3 subfamily
Top 10 interactors (score): NOG1 (0.999); NOC2 (0.998); RPA135 (0.995); NOP4 (0.994); NUG1 (0.993); HAS1 (0.991); RRP12 (0.991); NOP7 (0.991); ERB1 (0.991); NOP2 (0.99); NMD3 (0.989); RRP15 (0.987); RPL3 (0.986); DBP3 (0.985); CIC1 (0.985); RPL7A (0.985); RPL28 (0.984); RPL25 (0.983); RPL35B (0.983); RPL2B (0.983)
Homologues (species, bitscore): ABCF1 (Homo sapiens, 209.1); Abcf1 (Mus musculus, 220.3); abcf2a (Danio rerio, 205.7); abcf3 (Xenopus tropicalis, 218.4); CG9330 (Drosophila melanogaster, 218.0); abcf-1 (Caenorhabditis elegans, 205.7); ABCF4 (Arabidopsis thaliana, 225.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:99541-103131:+ | gene-YPL226W_AKU4011 | rna-NM_001184040.1_AKU4011 | cds-NP_015098.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:305474-309064:+ | gene-YPL226W_BG1 | rna-NM_001184040.1_BG1 | cds-NP_015098.1_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:124744-128334:+ | gene-YPL226W_Bruggeman | rna-NM_001184040.1_Bruggeman | cds-NP_015098.1_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:121780-125370:+ | gene-YPL226W_CAT1 | rna-NM_001184040.1_CAT1 | cds-NP_015098.1_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:103854-107444:+ | gene-YPL226W_CBS1585 | rna-NM_001184040.1_CBS1585 | cds-NP_015098.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:118265-121855:+ | gene-YPL226W_CBS436 | rna-NM_001184040.1_CBS436 | cds-NP_015098.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:109019-112609:+ | gene-YPL226W_CBS6412 | rna-NM_001184040.1_CBS6412 | cds-NP_015098.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:100004-103594:+ | gene-YPL226W_CBS6413 | rna-NM_001184040.1_CBS6413 | cds-NP_015098.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:121695-125285:+ | gene-YPL226W_CENPK1137D | rna-NM_001184040.1_CENPK1137D | cds-NP_015098.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:98939-102529:+ | gene-YPL226W_EthanolRed | rna-NM_001184040.1_EthanolRed | cds-NP_015098.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:105746-109336:+ | gene-YPL226W_FaliES1 | rna-NM_001184040.1_FaliES1 | cds-NP_015098.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000293.1:1197-4787:- | gene-YPL226W_JAY291 | rna-NM_001184040.1_JAY291 | cds-NP_015098.1_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:116582-120172:+ | gene-YPL226W_MUCL30387 | rna-NM_001184040.1_MUCL30387 | cds-NP_015098.1_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:115020-118610:+ | gene-YPL226W_MUCL30388 | rna-NM_001184040.1_MUCL30388 | cds-NP_015098.1_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:96984-100574:+ | gene-YPL226W_MUCL39482 | rna-NM_001184040.1_MUCL39482 | cds-NP_015098.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:115848-119438:+ | gene-YPL226W_MUCL42920 | rna-NM_001184040.1_MUCL42920 | cds-NP_015098.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:121750-125340:+ | gene-YPL226W_NCIM3186 | rna-NM_001184040.1_NCIM3186 | cds-NP_015098.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:103430-107020:+ | gene-YPL226W_NCYC1407 | rna-NM_001184040.1_NCYC1407 | cds-NP_015098.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:111154-114744:+ | gene-YPL226W_PE2H3 | rna-NM_001184040.1_PE2H3 | cds-NP_015098.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:110797-114387:+ | gene-YPL226W_PE2H4 | rna-NM_001184040.1_PE2H4 | cds-NP_015098.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:121767-125357:+ | gene-YPL226W_S288C | rna-NM_001184040.1_S288C | cds-NP_015098.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000056.1:63661-67251:+ | gene-YPL226W_SA1 | rna-NM_001184040.1_SA1 | cds-NP_015098.1_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:105747-109337:+ | gene-YPL226W_ThermosaccDry | rna-NM_001184040.1_ThermosaccDry | cds-NP_015098.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:345619-349209:+ | gene-YPL226W_VR1 | rna-NM_001184040.1_VR1 | cds-NP_015098.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:105288-108878:+ | gene-YPL226W_ZTW1 | rna-NM_001184040.1_ZTW1 | cds-NP_015098.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:106837-110406:+ | gene-YPL226W_Sparadoxus | rna-NM_001184040.1_Sparadoxus | cds-NP_015098.1_Sparadoxus | 91.0 | 98.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |