Gene name: NEL1
Reference locus (S288C): YHR035W
Gene biotype: protein_coding
Description: Uncharacterized protein YHR035W; Activator of Sar1p GTPase activity; paralog of Sec23 but does not associate with the COPII components; not an essential gene
Top 10 interactors (score): SFB3 (0.999); SEC31 (0.993); SEC13 (0.988); SEC24 (0.978); SFB2 (0.978); SAR1 (0.961); SEC26 (0.947); SEC21 (0.936); SEC63 (0.866); SEC16 (0.862); WBP1 (0.861); SEC27 (0.859); CHC1 (0.822); RET2 (0.784); KAR2 (0.776); SEC61 (0.756); SSH1 (0.745); AHA1 (0.74); YPT1 (0.733); SEC22 (0.731)
Homologues (species, bitscore): SEC23A (Homo sapiens, 97.1); Sec23a (Mus musculus, 104.0); sec23b (Danio rerio, 104.8); sec23a (Xenopus tropicalis, 101.7); Sec23 (Drosophila melanogaster, 100.5); sec-23 (Caenorhabditis elegans, 94.4); AT2G21630 (Arabidopsis thaliana, 82.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:166489-168381:+ | gene-YHR035W_AKU4011 | rna-NM_001179165.1_AKU4011 | cds-NP_011900.1_AKU4011 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000053.1:86694-88586:+ | gene-YHR035W_BG1 | rna-NM_001179165.1_BG1 | cds-NP_011900.1_BG1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:173928-175820:+ | gene-YHR035W_Bruggeman | rna-NM_001179165.1_Bruggeman | cds-NP_011900.1_Bruggeman | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:168313-170205:+ | gene-YHR035W_CAT1 | rna-NM_001179165.1_CAT1 | cds-NP_011900.1_CAT1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:166861-168753:+ | gene-YHR035W_CBS1585 | rna-NM_001179165.1_CBS1585 | cds-NP_011900.1_CBS1585 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:161096-162988:+ | gene-YHR035W_CBS436 | rna-NM_001179165.1_CBS436 | cds-NP_011900.1_CBS436 | 98.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:165823-167715:+ | gene-YHR035W_CBS6412 | rna-NM_001179165.1_CBS6412 | cds-NP_011900.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:166668-168560:+ | gene-YHR035W_CBS6413 | rna-NM_001179165.1_CBS6413 | cds-NP_011900.1_CBS6413 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:171480-173372:+ | gene-YHR035W_CENPK1137D | rna-NM_001179165.1_CENPK1137D | cds-NP_011900.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:165993-167885:+ | gene-YHR035W_EthanolRed | rna-NM_001179165.1_EthanolRed | cds-NP_011900.1_EthanolRed | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:166972-168864:+ | gene-YHR035W_FaliES1 | rna-NM_001179165.1_FaliES1 | cds-NP_011900.1_FaliES1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000273.1:12784-14676:- | gene-YHR035W_JAY291 | rna-NM_001179165.1_JAY291 | cds-NP_011900.1_JAY291 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:172997-174889:+ | gene-YHR035W_MUCL30387 | rna-NM_001179165.1_MUCL30387 | cds-NP_011900.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:173467-175359:+ | gene-YHR035W_MUCL30388 | rna-NM_001179165.1_MUCL30388 | cds-NP_011900.1_MUCL30388 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:165898-167790:+ | gene-YHR035W_MUCL39482 | rna-NM_001179165.1_MUCL39482 | cds-NP_011900.1_MUCL39482 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:172557-174449:+ | gene-YHR035W_MUCL42920 | rna-NM_001179165.1_MUCL42920 | cds-NP_011900.1_MUCL42920 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:178101-179993:+ | gene-YHR035W_NCIM3186 | rna-NM_001179165.1_NCIM3186 | cds-NP_011900.1_NCIM3186 | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:165761-167653:+ | gene-YHR035W_NCYC1407 | rna-NM_001179165.1_NCYC1407 | cds-NP_011900.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:168091-169983:+ | gene-YHR035W_PE2H3 | rna-NM_001179165.1_PE2H3 | cds-NP_011900.1_PE2H3 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:175532-177424:+ | gene-YHR035W_PE2H4 | rna-NM_001179165.1_PE2H4 | cds-NP_011900.1_PE2H4 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:178219-180111:+ | gene-YHR035W_S288C | rna-NM_001179165.1_S288C | cds-NP_011900.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000014.1:178459-180351:- | gene-YHR035W_SA1 | rna-NM_001179165.1_SA1 | cds-NP_011900.1_SA1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:168061-169953:+ | gene-YHR035W_ThermosaccDry | rna-NM_001179165.1_ThermosaccDry | cds-NP_011900.1_ThermosaccDry | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:174582-176474:+ | gene-YHR035W_VR1 | rna-NM_001179165.1_VR1 | cds-NP_011900.1_VR1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:159612-161504:+ | gene-YHR035W_ZTW1 | rna-NM_001179165.1_ZTW1 | cds-NP_011900.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:165680-167575:+ | gene-YHR035W_Sparadoxus | rna-NM_001179165.1_Sparadoxus | cds-NP_011900.1_Sparadoxus | 84.6 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |