Gene name: NEJ1
Reference locus (S288C): YLR265C
Gene biotype: protein_coding
Description: Non-homologous end-joining protein 1; Protein involved in regulation of nonhomologous end joining; interacts with DNA ligase IV components Dnl4p and Lif1p; repressed by MAT heterozygosity; regulates cellular distribution of Lif1p
Top 10 interactors (score): LIF1 (0.999); DNL4 (0.996); YKU70 (0.961); YKU80 (0.926); POL4 (0.924); RAD51 (0.79); RAD52 (0.788); RAD55 (0.775); RAD27 (0.75); PSY3 (0.736); EXO1 (0.717); RDH54 (0.711); RAD10 (0.7); RAD1 (0.669); SRS2 (0.662); SAE2 (0.653); SGS1 (0.648); RAD50 (0.629); SHU1 (0.625); MSH3 (0.624)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:622670-623698:- | gene-YLR265C_AKU4011 | rna-NM_001182152.1_AKU4011 | cds-NP_013367.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000170.1:108181-109209:+ | gene-YLR265C_BG1 | rna-NM_001182152.1_BG1 | cds-NP_013367.1_BG1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:656931-657959:- | gene-YLR265C_Bruggeman | rna-NM_001182152.1_Bruggeman | cds-NP_013367.1_Bruggeman | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:656117-657145:- | gene-YLR265C_CAT1 | rna-NM_001182152.1_CAT1 | cds-NP_013367.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:658165-659193:- | gene-YLR265C_CBS1585 | rna-NM_001182152.1_CBS1585 | cds-NP_013367.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:642402-643430:- | gene-YLR265C_CBS436 | rna-NM_001182152.1_CBS436 | cds-NP_013367.1_CBS436 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:621140-622168:- | gene-YLR265C_CBS6412 | rna-NM_001182152.1_CBS6412 | cds-NP_013367.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:658461-659489:- | gene-YLR265C_CBS6413 | rna-NM_001182152.1_CBS6413 | cds-NP_013367.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:659002-660030:- | gene-YLR265C_CENPK1137D | rna-NM_001182152.1_CENPK1137D | cds-NP_013367.1_CENPK1137D | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:616871-617899:- | gene-YLR265C_EthanolRed | rna-NM_001182152.1_EthanolRed | cds-NP_013367.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:645702-646730:- | gene-YLR265C_FaliES1 | rna-NM_001182152.1_FaliES1 | cds-NP_013367.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000136.1:12661-13689:+ | gene-YLR265C_JAY291 | rna-NM_001182152.1_JAY291 | cds-NP_013367.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:657786-658814:- | gene-YLR265C_MUCL30387 | rna-NM_001182152.1_MUCL30387 | cds-NP_013367.1_MUCL30387 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:662555-663583:- | gene-YLR265C_MUCL30388 | rna-NM_001182152.1_MUCL30388 | cds-NP_013367.1_MUCL30388 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:659146-660174:- | gene-YLR265C_MUCL39482 | rna-NM_001182152.1_MUCL39482 | cds-NP_013367.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:653932-654960:- | gene-YLR265C_MUCL42920 | rna-NM_001182152.1_MUCL42920 | cds-NP_013367.1_MUCL42920 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:674401-675429:- | gene-YLR265C_NCIM3186 | rna-NM_001182152.1_NCIM3186 | cds-NP_013367.1_NCIM3186 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:646134-647162:- | gene-YLR265C_NCYC1407 | rna-NM_001182152.1_NCYC1407 | cds-NP_013367.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:649923-650951:- | gene-YLR265C_PE2H3 | rna-NM_001182152.1_PE2H3 | cds-NP_013367.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:649667-650695:- | gene-YLR265C_PE2H4 | rna-NM_001182152.1_PE2H4 | cds-NP_013367.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:674427-675455:- | gene-YLR265C_S288C | rna-NM_001182152.1_S288C | cds-NP_013367.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000013.1:12906-13934:+ | gene-YLR265C_SA1 | rna-NM_001182152.1_SA1 | cds-NP_013367.1_SA1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:647655-648683:- | gene-YLR265C_ThermosaccDry | rna-NM_001182152.1_ThermosaccDry | cds-NP_013367.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:658992-660020:- | gene-YLR265C_VR1 | rna-NM_001182152.1_VR1 | cds-NP_013367.1_VR1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000024.1:171955-172983:- | gene-YLR265C_ZTW1 | rna-NM_001182152.1_ZTW1 | cds-NP_013367.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:633607-634638:- | gene-YLR265C_Sparadoxus | rna-NM_001182152.1_Sparadoxus | cds-NP_013367.1_Sparadoxus | 81.0 | 99.6 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |