Gene name: NDE1
Reference locus (S288C): YMR145C
Gene biotype: protein_coding
Description: Mitochondrial external NADH dehydrogenase; type II NAD(P)H:quinone oxidoreductase that catalyzes the oxidation of cytosolic NADH; Nde1p and Nde2p provide cytosolic NADH to the mitochondrial respiratory chain; NDE1 has a paralog, NDE2, that arose from the whole genome duplication
Top 10 interactors (score): COX4 (0.994); CYT1 (0.986); RIP1 (0.983); COX5A (0.972); COR1 (0.97); QCR2 (0.964); CYC1 (0.959); COX12 (0.959); COX11 (0.958); SDH2 (0.954); COX9 (0.947); QCR8 (0.944); QCR7 (0.944); COX2 (0.938); COX6 (0.935); QCR9 (0.933); QCR6 (0.933); GUT2 (0.933); ALD4 (0.929); COX13 (0.929)
Homologues (species, bitscore): NDB3 (Arabidopsis thaliana, 331.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:594286-595968:- | gene-YMR145C_AKU4011 | rna-NM_001182647.1_AKU4011 | cds-NP_013865.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000068.1:76560-78242:+ | gene-YMR145C_BG1 | rna-NM_001182647.1_BG1 | cds-NP_013865.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:537473-539155:- | gene-YMR145C_Bruggeman | rna-NM_001182647.1_Bruggeman | cds-NP_013865.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:539688-541370:- | gene-YMR145C_CAT1 | rna-NM_001182647.1_CAT1 | cds-NP_013865.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:527209-528891:- | gene-YMR145C_CBS1585 | rna-NM_001182647.1_CBS1585 | cds-NP_013865.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:531102-532784:- | gene-YMR145C_CBS436 | rna-NM_001182647.1_CBS436 | cds-NP_013865.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:640203-641885:- | gene-YMR145C_CBS6412 | rna-NM_001182647.1_CBS6412 | cds-NP_013865.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:525770-527452:- | gene-YMR145C_CBS6413 | rna-NM_001182647.1_CBS6413 | cds-NP_013865.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:549314-550996:- | gene-YMR145C_CENPK1137D | rna-NM_001182647.1_CENPK1137D | cds-NP_013865.1_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:525403-527085:- | gene-YMR145C_EthanolRed | rna-NM_001182647.1_EthanolRed | cds-NP_013865.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:532402-534084:- | gene-YMR145C_FaliES1 | rna-NM_001182647.1_FaliES1 | cds-NP_013865.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000115.1:4236-5918:- | gene-YMR145C_JAY291 | rna-NM_001182647.1_JAY291 | cds-NP_013865.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:532198-533880:- | gene-YMR145C_MUCL30387 | rna-NM_001182647.1_MUCL30387 | cds-NP_013865.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:537730-539412:- | gene-YMR145C_MUCL30388 | rna-NM_001182647.1_MUCL30388 | cds-NP_013865.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:527910-529592:- | gene-YMR145C_MUCL39482 | rna-NM_001182647.1_MUCL39482 | cds-NP_013865.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:534209-535891:- | gene-YMR145C_MUCL42920 | rna-NM_001182647.1_MUCL42920 | cds-NP_013865.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:554747-556429:- | gene-YMR145C_NCIM3186 | rna-NM_001182647.1_NCIM3186 | cds-NP_013865.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:527549-529231:- | gene-YMR145C_NCYC1407 | rna-NM_001182647.1_NCYC1407 | cds-NP_013865.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:537990-539672:- | gene-YMR145C_PE2H3 | rna-NM_001182647.1_PE2H3 | cds-NP_013865.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:538447-540129:- | gene-YMR145C_PE2H4 | rna-NM_001182647.1_PE2H4 | cds-NP_013865.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:554793-556475:- | gene-YMR145C_S288C | rna-NM_001182647.1_S288C | cds-NP_013865.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000048.1:14796-16478:+ | gene-YMR145C_SA1 | rna-NM_001182647.1_SA1 | cds-NP_013865.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:528050-529732:- | gene-YMR145C_ThermosaccDry | rna-NM_001182647.1_ThermosaccDry | cds-NP_013865.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:540504-542186:- | gene-YMR145C_VR1 | rna-NM_001182647.1_VR1 | cds-NP_013865.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:502946-504628:- | gene-YMR145C_ZTW1 | rna-NM_001182647.1_ZTW1 | cds-NP_013865.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:539337-541019:- | gene-YMR145C_Sparadoxus | rna-NM_001182647.1_Sparadoxus | cds-NP_013865.1_Sparadoxus | 91.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |