Gene name: NDC1
Reference locus (S288C): YML031W
Gene biotype: protein_coding
Description: Nucleoporin NDC1; Subunit of the transmembrane ring of the nuclear pore complex (NPC); contributes to nucleocytoplasmic transport, NPC biogenesis and spindle pole body duplication; homologous to human NDC1
Top 10 interactors (score): POM34 (0.996); POM152 (0.994); ASM4 (0.975); NUP82 (0.957); NUP188 (0.956); NUP53 (0.954); NUP170 (0.94); MEX67 (0.935); YSH1 (0.906); PTA1 (0.905); STO1 (0.9); CDC33 (0.9); KAR2 (0.9); SSA3 (0.9); SSC1 (0.9); OPI10 (0.9); SMT3 (0.9); CFT2 (0.9); HDA1 (0.9); NAB3 (0.9)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:263782-265749:+ | gene-YML031W_AKU4011 | rna-NM_001182389.1_AKU4011 | cds-NP_013681.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:277121-279088:- | gene-YML031W_BG1 | rna-NM_001182389.1_BG1 | cds-NP_013681.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:203736-205703:+ | gene-YML031W_Bruggeman | rna-NM_001182389.1_Bruggeman | cds-NP_013681.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:206250-208217:+ | gene-YML031W_CAT1 | rna-NM_001182389.1_CAT1 | cds-NP_013681.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:196731-198698:+ | gene-YML031W_CBS1585 | rna-NM_001182389.1_CBS1585 | cds-NP_013681.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:202270-204237:+ | gene-YML031W_CBS436 | rna-NM_001182389.1_CBS436 | cds-NP_013681.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:310470-312437:+ | gene-YML031W_CBS6412 | rna-NM_001182389.1_CBS6412 | cds-NP_013681.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:195989-197956:+ | gene-YML031W_CBS6413 | rna-NM_001182389.1_CBS6413 | cds-NP_013681.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:208711-210678:+ | gene-YML031W_CENPK1137D | rna-NM_001182389.1_CENPK1137D | cds-NP_013681.1_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:196758-198725:+ | gene-YML031W_EthanolRed | rna-NM_001182389.1_EthanolRed | cds-NP_013681.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:199722-201689:+ | gene-YML031W_FaliES1 | rna-NM_001182389.1_FaliES1 | cds-NP_013681.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000237.1:10448-12415:- | gene-YML031W_JAY291 | rna-NM_001182389.1_JAY291 | cds-NP_013681.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:201469-203436:+ | gene-YML031W_MUCL30387 | rna-NM_001182389.1_MUCL30387 | cds-NP_013681.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:205446-207413:+ | gene-YML031W_MUCL30388 | rna-NM_001182389.1_MUCL30388 | cds-NP_013681.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:197017-198984:+ | gene-YML031W_MUCL39482 | rna-NM_001182389.1_MUCL39482 | cds-NP_013681.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:202575-204542:+ | gene-YML031W_MUCL42920 | rna-NM_001182389.1_MUCL42920 | cds-NP_013681.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:214143-216110:+ | gene-YML031W_NCIM3186 | rna-NM_001182389.1_NCIM3186 | cds-NP_013681.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:196960-198927:+ | gene-YML031W_NCYC1407 | rna-NM_001182389.1_NCYC1407 | cds-NP_013681.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:202861-204828:+ | gene-YML031W_PE2H3 | rna-NM_001182389.1_PE2H3 | cds-NP_013681.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:208956-210923:+ | gene-YML031W_PE2H4 | rna-NM_001182389.1_PE2H4 | cds-NP_013681.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:214189-216156:+ | gene-YML031W_S288C | rna-NM_001182389.1_S288C | cds-NP_013681.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000088.1:22693-24660:- | gene-YML031W_SA1 | rna-NM_001182389.1_SA1 | cds-NP_013681.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:196795-198762:+ | gene-YML031W_ThermosaccDry | rna-NM_001182389.1_ThermosaccDry | cds-NP_013681.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:200802-202769:+ | gene-YML031W_VR1 | rna-NM_001182389.1_VR1 | cds-NP_013681.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:175848-177815:+ | gene-YML031W_ZTW1 | rna-NM_001182389.1_ZTW1 | cds-NP_013681.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:207598-209565:+ | gene-YML031W_Sparadoxus | rna-NM_001182389.1_Sparadoxus | cds-NP_013681.1_Sparadoxus | 88.7 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |