Gene name: NCB2
Reference locus (S288C): YDR397C
Gene biotype: protein_coding
Description: Subunit of a heterodimeric NC2 transcription regulator complex; complex binds to TBP and can repress transcription by preventing preinitiation complex assembly or stimulate activated transcription; homologous to human NC2beta; complex also includes Bur6p
Top 10 interactors (score): BUR6 (0.999); DPB4 (0.99); SPT15 (0.974); SGF29 (0.969); SWD3 (0.963); MOT1 (0.938); NAT5 (0.878); ADA2 (0.854); SUA7 (0.798); HAP3 (0.744); HAP5 (0.723); DID2 (0.695); NOP14 (0.671); GCN5 (0.627); SIT4 (0.616); TAF11 (0.598); ERS1 (0.575); GAT4 (0.572); MSC3 (0.572); HAP2 (0.554)
Homologues (species, bitscore): DR1 (Homo sapiens, 105.5); Dr1 (Mus musculus, 105.5); dr1 (Danio rerio, 103.2); dr1 (Xenopus tropicalis, 103.6); NC2beta (Drosophila melanogaster, 86.3); dro-1 (Caenorhabditis elegans, 57.4); NF-YB12 (Arabidopsis thaliana, 88.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1206507-1207039:- | gene-YDR397C_AKU4011 | rna-NM_001180705.1_AKU4011 | cds-NP_010685.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:84991-85523:- | gene-YDR397C_BG1 | rna-NM_001180705.1_BG1 | cds-NP_010685.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1237392-1237924:- | gene-YDR397C_Bruggeman | rna-NM_001180705.1_Bruggeman | cds-NP_010685.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1215948-1216480:- | gene-YDR397C_CAT1 | rna-NM_001180705.1_CAT1 | cds-NP_010685.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1201428-1201960:- | gene-YDR397C_CBS1585 | rna-NM_001180705.1_CBS1585 | cds-NP_010685.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1220295-1220827:- | gene-YDR397C_CBS436 | rna-NM_001180705.1_CBS436 | cds-NP_010685.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1197481-1198013:- | gene-YDR397C_CBS6412 | rna-NM_001180705.1_CBS6412 | cds-NP_010685.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1219336-1219868:- | gene-YDR397C_CBS6413 | rna-NM_001180705.1_CBS6413 | cds-NP_010685.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1265029-1265561:- | gene-YDR397C_CENPK1137D | rna-NM_001180705.1_CENPK1137D | cds-NP_010685.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1210913-1211445:- | gene-YDR397C_EthanolRed | rna-NM_001180705.1_EthanolRed | cds-NP_010685.1_EthanolRed | 98.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1214223-1214755:- | gene-YDR397C_FaliES1 | rna-NM_001180705.1_FaliES1 | cds-NP_010685.1_FaliES1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000181.1:40782-41314:+ | gene-YDR397C_JAY291 | rna-NM_001180705.1_JAY291 | cds-NP_010685.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1220954-1221486:- | gene-YDR397C_MUCL30387 | rna-NM_001180705.1_MUCL30387 | cds-NP_010685.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1203065-1203597:- | gene-YDR397C_MUCL30388 | rna-NM_001180705.1_MUCL30388 | cds-NP_010685.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1192756-1193288:- | gene-YDR397C_MUCL39482 | rna-NM_001180705.1_MUCL39482 | cds-NP_010685.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1135194-1135726:- | gene-YDR397C_MUCL42920 | rna-NM_001180705.1_MUCL42920 | cds-NP_010685.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1266289-1266821:- | gene-YDR397C_NCIM3186 | rna-NM_001180705.1_NCIM3186 | cds-NP_010685.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1206728-1207260:- | gene-YDR397C_NCYC1407 | rna-NM_001180705.1_NCYC1407 | cds-NP_010685.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1216855-1217387:- | gene-YDR397C_PE2H3 | rna-NM_001180705.1_PE2H3 | cds-NP_010685.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1222428-1222960:- | gene-YDR397C_PE2H4 | rna-NM_001180705.1_PE2H4 | cds-NP_010685.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1266366-1266898:- | gene-YDR397C_S288C | rna-NM_001180705.1_S288C | cds-NP_010685.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000071.1:40894-41426:+ | gene-YDR397C_SA1 | rna-NM_001180705.1_SA1 | cds-NP_010685.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1218485-1219017:- | gene-YDR397C_ThermosaccDry | rna-NM_001180705.1_ThermosaccDry | cds-NP_010685.1_ThermosaccDry | 98.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1233667-1234199:- | gene-YDR397C_VR1 | rna-NM_001180705.1_VR1 | cds-NP_010685.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:261293-261825:- | gene-YDR397C_ZTW1 | rna-NM_001180705.1_ZTW1 | cds-NP_010685.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1213601-1214133:- | gene-YDR397C_Sparadoxus | rna-NM_001180705.1_Sparadoxus | cds-NP_010685.1_Sparadoxus | 94.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |