Gene name: NCA3
Reference locus (S288C): YJL116C
Gene biotype: protein_coding
Description: Protein involved in mitochondrion organization; functions with Nca2p to regulate mitochondrial expression of subunits 6 (Atp6p) and 8 (Atp8p) of the Fo-F1 ATP synthase; SWAT-GFP, seamless-GFP and mCherry fusion proteins localize to the vacuole; member of the SUN family; expression induced in cells treated with the mycotoxin patulin; NCA3 has a paralog, UTH1, that arose from the whole genome duplication
Top 10 interactors (score): NCA2 (0.849); ATP8 (0.748); YGL188C-A (0.695); AEP3 (0.656); ATP6 (0.617); PET112 (0.614); YAL064W-B (0.611); ATP22 (0.573); YKL068W-A (0.569); YHR213W-A (0.569); RSM28 (0.499); YMR317W (0.499); MBR1 (0.49); ISF1 (0.487); YGL159W (0.48); PUF3 (0.463); RMD9 (0.461); CIT3 (0.455); PRM7 (0.45)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:182180-183193:- | gene-YJL116C_AKU4011 | rna-NM_001181549.1_AKU4011 | cds-NP_012419.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:430543-431556:+ | gene-YJL116C_BG1 | rna-NM_001181549.1_BG1 | cds-NP_012419.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:194228-195241:- | gene-YJL116C_Bruggeman | rna-NM_001181549.1_Bruggeman | cds-NP_012419.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:198035-199048:- | gene-YJL116C_CAT1 | rna-NM_001181549.1_CAT1 | cds-NP_012419.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:187813-188826:- | gene-YJL116C_CBS1585 | rna-NM_001181549.1_CBS1585 | cds-NP_012419.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:212552-213565:- | gene-YJL116C_CBS436 | rna-NM_001181549.1_CBS436 | cds-NP_012419.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:183834-184847:- | gene-YJL116C_CBS6412 | rna-NM_001181549.1_CBS6412 | cds-NP_012419.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:185288-186301:- | gene-YJL116C_CBS6413 | rna-NM_001181549.1_CBS6413 | cds-NP_012419.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:176329-177342:- | gene-YJL116C_CENPK1137D | rna-NM_001181549.1_CENPK1137D | cds-NP_012419.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:186144-187157:- | gene-YJL116C_EthanolRed | rna-NM_001181549.1_EthanolRed | cds-NP_012419.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:191800-192813:- | gene-YJL116C_FaliES1 | rna-NM_001181549.1_FaliES1 | cds-NP_012419.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000099.1:72974-73987:- | gene-YJL116C_JAY291 | rna-NM_001181549.1_JAY291 | cds-NP_012419.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:196496-197509:- | gene-YJL116C_MUCL30387 | rna-NM_001181549.1_MUCL30387 | cds-NP_012419.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:192573-193586:- | gene-YJL116C_MUCL30388 | rna-NM_001181549.1_MUCL30388 | cds-NP_012419.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:186759-187772:- | gene-YJL116C_MUCL39482 | rna-NM_001181549.1_MUCL39482 | cds-NP_012419.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:192562-193575:- | gene-YJL116C_MUCL42920 | rna-NM_001181549.1_MUCL42920 | cds-NP_012419.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:193839-194852:- | gene-YJL116C_NCIM3186 | rna-NM_001181549.1_NCIM3186 | cds-NP_012419.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:185166-186179:- | gene-YJL116C_NCYC1407 | rna-NM_001181549.1_NCYC1407 | cds-NP_012419.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:197956-198969:- | gene-YJL116C_PE2H3 | rna-NM_001181549.1_PE2H3 | cds-NP_012419.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:197600-198613:- | gene-YJL116C_PE2H4 | rna-NM_001181549.1_PE2H4 | cds-NP_012419.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:193860-194873:- | gene-YJL116C_S288C | rna-NM_001181549.1_S288C | cds-NP_012419.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000085.1:4292-5305:+ | gene-YJL116C_SA1 | rna-NM_001181549.1_SA1 | cds-NP_012419.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:184987-186000:- | gene-YJL116C_ThermosaccDry | rna-NM_001181549.1_ThermosaccDry | cds-NP_012419.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:192073-193086:- | gene-YJL116C_VR1 | rna-NM_001181549.1_VR1 | cds-NP_012419.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:172269-173282:- | gene-YJL116C_ZTW1 | rna-NM_001181549.1_ZTW1 | cds-NP_012419.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:197472-198485:- | gene-YJL116C_Sparadoxus | rna-NM_001181549.1_Sparadoxus | cds-NP_012419.1_Sparadoxus | 90.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |