Gene name: NAN1
Reference locus (S288C): YPL126W
Gene biotype: protein_coding
Description: NET1-associated nuclear protein 1; U3 snoRNP protein; component of the small (ribosomal) subunit (SSU) processosome containing U3 snoRNA; required for the biogenesis of18S rRNA
Top 10 interactors (score): DIP2 (0.999); MTR4 (0.999); UTP20 (0.999); UTP21 (0.999); NOP14 (0.999); UTP7 (0.999); UTP10 (0.999); ENP2 (0.999); NOP7 (0.999); RRP9 (0.999); UTP22 (0.999); KRE33 (0.999); MPP10 (0.999); SNU13 (0.999); SOF1 (0.999); ECM16 (0.999); MRD1 (0.999); NOP56 (0.999); EMG1 (0.999); UTP15 (0.999)
Homologues (species, bitscore): WDR75 (Homo sapiens, 52.0); wdr75 (Xenopus tropicalis, 55.1); CG12050 (Drosophila melanogaster, 58.9); AT2G18900 (Arabidopsis thaliana, 54.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:287863-290553:+ | gene-YPL126W_AKU4011 | rna-NM_001183940.1_AKU4011 | cds-NP_015199.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:493550-496240:+ | gene-YPL126W_BG1 | rna-NM_001183940.1_BG1 | cds-NP_015199.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:313863-316553:+ | gene-YPL126W_Bruggeman | rna-NM_001183940.1_Bruggeman | cds-NP_015199.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:310533-313223:+ | gene-YPL126W_CAT1 | rna-NM_001183940.1_CAT1 | cds-NP_015199.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:291936-294626:+ | gene-YPL126W_CBS1585 | rna-NM_001183940.1_CBS1585 | cds-NP_015199.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:306600-309290:+ | gene-YPL126W_CBS436 | rna-NM_001183940.1_CBS436 | cds-NP_015199.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:296605-299295:+ | gene-YPL126W_CBS6412 | rna-NM_001183940.1_CBS6412 | cds-NP_015199.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:288572-291262:+ | gene-YPL126W_CBS6413 | rna-NM_001183940.1_CBS6413 | cds-NP_015199.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:310112-312802:+ | gene-YPL126W_CENPK1137D | rna-NM_001183940.1_CENPK1137D | cds-NP_015199.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:286552-289242:+ | gene-YPL126W_EthanolRed | rna-NM_001183940.1_EthanolRed | cds-NP_015199.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:294144-296834:+ | gene-YPL126W_FaliES1 | rna-NM_001183940.1_FaliES1 | cds-NP_015199.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000007.1:69015-71705:- | gene-YPL126W_JAY291 | rna-NM_001183940.1_JAY291 | cds-NP_015199.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:305106-307796:+ | gene-YPL126W_MUCL30387 | rna-NM_001183940.1_MUCL30387 | cds-NP_015199.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:303115-305805:+ | gene-YPL126W_MUCL30388 | rna-NM_001183940.1_MUCL30388 | cds-NP_015199.1_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:285265-287955:+ | gene-YPL126W_MUCL39482 | rna-NM_001183940.1_MUCL39482 | cds-NP_015199.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:342504-345194:+ | gene-YPL126W_MUCL42920 | rna-NM_001183940.1_MUCL42920 | cds-NP_015199.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:310193-312883:+ | gene-YPL126W_NCIM3186 | rna-NM_001183940.1_NCIM3186 | cds-NP_015199.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:291718-294408:+ | gene-YPL126W_NCYC1407 | rna-NM_001183940.1_NCYC1407 | cds-NP_015199.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:299176-301866:+ | gene-YPL126W_PE2H3 | rna-NM_001183940.1_PE2H3 | cds-NP_015199.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:298799-301489:+ | gene-YPL126W_PE2H4 | rna-NM_001183940.1_PE2H4 | cds-NP_015199.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:310210-312900:+ | gene-YPL126W_S288C | rna-NM_001183940.1_S288C | cds-NP_015199.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000012.1:60780-63470:- | gene-YPL126W_SA1 | rna-NM_001183940.1_SA1 | cds-NP_015199.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:293942-296632:+ | gene-YPL126W_ThermosaccDry | rna-NM_001183940.1_ThermosaccDry | cds-NP_015199.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:308919-311609:+ | gene-YPL126W_VR1 | rna-NM_001183940.1_VR1 | cds-NP_015199.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:293267-295957:+ | gene-YPL126W_ZTW1 | rna-NM_001183940.1_ZTW1 | cds-NP_015199.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:295029-297719:+ | gene-YPL126W_Sparadoxus | rna-NM_001183940.1_Sparadoxus | cds-NP_015199.1_Sparadoxus | 90.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |