Gene name: NAM8
Reference locus (S288C): YHR086W
Gene biotype: protein_coding
Description: RNA binding protein, component of the U1 snRNP protein; mutants are defective in meiotic recombination and in formation of viable spores, involved in the formation of DSBs through meiosis-specific splicing of REC107 pre-mRNA; Nam8p regulon embraces the meiotic pre-mRNAs of REC107, HFM1, AMA1 SPO22 and PCH2; the putative RNA binding domains RRM2 and RRM3 are required for Nam8p meiotic function
Top 10 interactors (score): SNU66 (0.999); PRP39 (0.999); MUD1 (0.999); SNU71 (0.999); LEA1 (0.999); YHC1 (0.999); LUC7 (0.999); SNU56 (0.999); PRP42 (0.999); SNP1 (0.999); PRP40 (0.999); SMD3 (0.999); SMD1 (0.998); RSE1 (0.998); CBC2 (0.998); MUD2 (0.998); SMD2 (0.998); SMB1 (0.998); HSH155 (0.998); SME1 (0.997)
Homologues (species, bitscore): TIA1 (Homo sapiens, 119.0); Tia1 (Mus musculus, 122.5); tia1l (Danio rerio, 119.0); tia1 (Xenopus tropicalis, 116.7); CG15440 (Drosophila melanogaster, 99.0); tiar-1 (Caenorhabditis elegans, 98.2); RBP45B (Arabidopsis thaliana, 182.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:264562-266133:+ | gene-YHR086W_AKU4011 | rna-NM_001179216.1_AKU4011 | cds-NP_011954.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000053.1:184910-186481:+ | gene-YHR086W_BG1 | rna-NM_001179216.1_BG1 | cds-NP_011954.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:272389-273960:+ | gene-YHR086W_Bruggeman | rna-NM_001179216.1_Bruggeman | cds-NP_011954.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:267530-269101:+ | gene-YHR086W_CAT1 | rna-NM_001179216.1_CAT1 | cds-NP_011954.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:263604-265175:+ | gene-YHR086W_CBS1585 | rna-NM_001179216.1_CBS1585 | cds-NP_011954.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:261468-263039:+ | gene-YHR086W_CBS436 | rna-NM_001179216.1_CBS436 | cds-NP_011954.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:266952-268523:+ | gene-YHR086W_CBS6412 | rna-NM_001179216.1_CBS6412 | cds-NP_011954.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:264643-266214:+ | gene-YHR086W_CBS6413 | rna-NM_001179216.1_CBS6413 | cds-NP_011954.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:271320-272891:+ | gene-YHR086W_CENPK1137D | rna-NM_001179216.1_CENPK1137D | cds-NP_011954.1_CENPK1137D | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:324168-325739:+ | gene-YHR086W_EthanolRed | rna-NM_001179216.1_EthanolRed | cds-NP_011954.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:264972-266543:+ | gene-YHR086W_FaliES1 | rna-NM_001179216.1_FaliES1 | cds-NP_011954.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000394.1:47697-49268:+ | gene-YHR086W_JAY291 | rna-NM_001179216.1_JAY291 | cds-NP_011954.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:271910-273481:+ | gene-YHR086W_MUCL30387 | rna-NM_001179216.1_MUCL30387 | cds-NP_011954.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:271772-273343:+ | gene-YHR086W_MUCL30388 | rna-NM_001179216.1_MUCL30388 | cds-NP_011954.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:263927-265498:+ | gene-YHR086W_MUCL39482 | rna-NM_001179216.1_MUCL39482 | cds-NP_011954.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:270675-272246:+ | gene-YHR086W_MUCL42920 | rna-NM_001179216.1_MUCL42920 | cds-NP_011954.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:278035-279606:+ | gene-YHR086W_NCIM3186 | rna-NM_001179216.1_NCIM3186 | cds-NP_011954.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:266392-267963:+ | gene-YHR086W_NCYC1407 | rna-NM_001179216.1_NCYC1407 | cds-NP_011954.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:266062-267633:+ | gene-YHR086W_PE2H3 | rna-NM_001179216.1_PE2H3 | cds-NP_011954.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:273509-275080:+ | gene-YHR086W_PE2H4 | rna-NM_001179216.1_PE2H4 | cds-NP_011954.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:278153-279724:+ | gene-YHR086W_S288C | rna-NM_001179216.1_S288C | cds-NP_011954.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000014.1:79264-80835:- | gene-YHR086W_SA1 | rna-NM_001179216.1_SA1 | cds-NP_011954.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:266063-267634:+ | gene-YHR086W_ThermosaccDry | rna-NM_001179216.1_ThermosaccDry | cds-NP_011954.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:273937-275508:+ | gene-YHR086W_VR1 | rna-NM_001179216.1_VR1 | cds-NP_011954.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:257616-259188:+ | gene-YHR086W_ZTW1 | rna-NM_001179216.1_ZTW1 | cds-NP_011954.1_ZTW1 | 99.4 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:263376-264947:+ | gene-YHR086W_Sparadoxus | rna-NM_001179216.1_Sparadoxus | cds-NP_011954.1_Sparadoxus | 89.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |